View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12782_low_2 (Length: 389)
Name: NF12782_low_2
Description: NF12782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12782_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 5727867 - 5728254
Alignment:
| Q |
2 |
ccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaattttgttag |
101 |
Q |
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| T |
5727867 |
ccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaattttgttag |
5727966 |
T |
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| Q |
102 |
gaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctatctggtctgt |
201 |
Q |
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| T |
5727967 |
gaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctatctggtctgt |
5728066 |
T |
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| Q |
202 |
gtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatagttccactatctttgccttgtcc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5728067 |
gtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatggttccactatctttgccttgtcc |
5728166 |
T |
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| Q |
302 |
ttattattggccatgattccactataataattttttcttagaagcttgatagaataattactctattttcagttaattttgcaactcc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5728167 |
ttattattggccatgattccactataataattttttcttagaagcttgatagaataattactctattttcagttaattttgtaactcc |
5728254 |
T |
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