View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12782_low_3 (Length: 381)

Name: NF12782_low_3
Description: NF12782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12782_low_3
NF12782_low_3
[»] chr4 (1 HSPs)
chr4 (8-365)||(52451659-52452008)
[»] chr2 (2 HSPs)
chr2 (8-99)||(17244517-17244608)
chr2 (17-109)||(17277214-17277306)
[»] chr8 (5 HSPs)
chr8 (186-227)||(11381937-11381978)
chr8 (185-228)||(5436731-5436774)
chr8 (189-226)||(7458339-7458376)
chr8 (189-226)||(7470741-7470778)
chr8 (189-229)||(6351626-6351666)
[»] chr3 (2 HSPs)
chr3 (179-228)||(10482029-10482078)
chr3 (189-225)||(39473918-39473954)
[»] chr5 (2 HSPs)
chr5 (186-228)||(22701369-22701411)
chr5 (185-225)||(32699479-32699519)
[»] chr6 (1 HSPs)
chr6 (180-228)||(2388077-2388125)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 52452008 - 52451659
Alignment:
Q  8 gagaagaactcagaattattttatgcggttcttggaggtctaggccaatttgggattataacccgagcaagaatagctcttggacctgcacccaagaggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52452008 gagaagaactcagaattattttatgcggttcttggaggtctaggccaatttgggattataacccgagcaagaatagctcttggacctgcacccaagaggg 52451909  T
Q  108 taagtaacatgttctctaattaatattcttgcttattcatgatgttgtatagtaggaatcttgagcacatattcaaagacggttgtaaaatgatcattag 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52451908 taagttacatgttctctaattaatattcttgcttattcatgatgttgtatagtaggaatcttgagcacatatttaaagacggttgtaaaatgatcattag 52451809  T
Q  208 tatcattttaattaataataacaaaaagtatataatactataaattcatatggtttcttgttagtatgtcacaatcacaattatagttgcttaccatttg 307  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||        ||||||||||||    
T  52451808 tatcattttaattaataataacaaaaagtatacaatatcataaattcttatggtttcttgttagtatgtcacaatcacaa--------gcttaccatttg 52451717  T
Q  308 ctataatgcatatttgcaagtcaaacttagaaaaatattcattaatcataaatatatt 365  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52451716 ctataatgcatatttgcaagtcaaacttagaaaaatatgcattaatcataaatatatt 52451659  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 17244517 - 17244608
Alignment:
Q  8 gagaagaactcagaattattttatgcggttcttggaggtctaggccaatttgggattataacccgagcaagaatagctcttggacctgcacc 99  Q
    ||||||||||||||  |||||||||| ||||||||||| ||||| ||||||||  | |||||| |||||||||||  |||||||||||||||    
T  17244517 gagaagaactcagaggtattttatgccgttcttggaggactaggtcaatttggagtgataaccagagcaagaatacttcttggacctgcacc 17244608  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 17277214 - 17277306
Alignment:
Q  17 tcagaattattttatgcggttcttggaggtctaggccaatttgggattataacccgagcaagaatagctcttggacctgcacccaagagggta 109  Q
    |||||||||||| |||  |||||||||||  |||| |||||||| ||||||||  | ||||||||||||||||  || ||||| |||||||||    
T  17277214 tcagaattatttaatggagttcttggaggattaggacaatttggaattataacaagggcaagaatagctcttgagccagcaccaaagagggta 17277306  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 11381937 - 11381978
Alignment:
Q  186 acggttgtaaaatgatcattagtatcattttaattaataata 227  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  11381937 acggttgtaaaataatcattagtatcactttaattaataata 11381978  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 5436731 - 5436774
Alignment:
Q  185 gacggttgtaaaatgatcattagtatcattttaattaataataa 228  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||    
T  5436731 gacggttgtaaaatggtcattagtatcacattaattaataataa 5436774  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 7458376 - 7458339
Alignment:
Q  189 gttgtaaaatgatcattagtatcattttaattaataat 226  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  7458376 gttgtaaaatgatcattagtatcactttaagtaataat 7458339  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 7470778 - 7470741
Alignment:
Q  189 gttgtaaaatgatcattagtatcattttaattaataat 226  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  7470778 gttgtaaaatgatcattagtatcactttaaataataat 7470741  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 6351666 - 6351626
Alignment:
Q  189 gttgtaaaatgatcattagtatcattttaattaataataac 229  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  6351666 gttgtaaaatgatcattaaaatcactttaattaataataac 6351626  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 10482029 - 10482078
Alignment:
Q  179 ttcaaagacggttgtaaaatgatcattagtatcattttaattaataataa 228  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||||||||    
T  10482029 ttcaaagacagttgtaaaataatcattagtataactttaattaataataa 10482078  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 39473954 - 39473918
Alignment:
Q  189 gttgtaaaatgatcattagtatcattttaattaataa 225  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  39473954 gttgtaaaatgaccattagtatcactttaattaataa 39473918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 22701369 - 22701411
Alignment:
Q  186 acggttgtaaaatgatcattagtatcattttaattaataataa 228  Q
    |||||||||||||||| |||||| ||| |||||||||||||||    
T  22701369 acggttgtaaaatgataattagtgtcactttaattaataataa 22701411  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 32699519 - 32699479
Alignment:
Q  185 gacggttgtaaaatgatcattagtatcattttaattaataa 225  Q
    ||||||| |||||||| ||||| ||||||||||||||||||    
T  32699519 gacggttttaaaatgaccattaatatcattttaattaataa 32699479  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 2388077 - 2388125
Alignment:
Q  180 tcaaagacggttgtaaaatgatcattagtatcattttaattaataataa 228  Q
    |||||||||||||||| |||||||||| ||| | |||| ||||||||||    
T  2388077 tcaaagacggttgtaagatgatcattactataactttagttaataataa 2388125  T

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