View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12782_low_4 (Length: 255)
Name: NF12782_low_4
Description: NF12782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12782_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 17190438 - 17190212
Alignment:
| Q |
18 |
ataacatggtattaaatagcttggtctgattttgggatctattgcaaagaacatggcaacgaagagtgcttgaaccgaataaccccaataatttggtgac |
117 |
Q |
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| T |
17190438 |
ataacatggtattaaatagcttggtctgattttgggatctattgcaaagaacatggcaacgaagagtgcttgaaccgaataaccc-aataatttggtgac |
17190340 |
T |
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| Q |
118 |
caaattctggcacaatggtatttgatcc-tatatattaagagtagtttagtccttttagcatatattatatatactctttgtatgtctcctactattcac |
216 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17190339 |
caaattccggcacaatggtatttgatccctatatattaagagtagtttggtccttttagcatctattatatatactctttgtatgtctcctactattcac |
17190240 |
T |
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| Q |
217 |
ttttgttattcacactattgaaccctat |
244 |
Q |
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| T |
17190239 |
ttttgttattcacactattgaaccctat |
17190212 |
T |
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