View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12783_high_1 (Length: 653)

Name: NF12783_high_1
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12783_high_1
NF12783_high_1
[»] chr1 (18 HSPs)
chr1 (1-499)||(52133275-52133773)
chr1 (549-609)||(27564651-27564711)
chr1 (551-609)||(48716200-48716258)
chr1 (552-609)||(37649322-37649379)
chr1 (541-593)||(26274569-26274621)
chr1 (549-609)||(38595278-38595338)
chr1 (551-609)||(3000443-3000501)
chr1 (551-609)||(41758929-41758987)
chr1 (549-609)||(2582039-2582099)
chr1 (551-603)||(47452238-47452290)
chr1 (550-609)||(9474793-9474852)
chr1 (549-609)||(43256-43316)
chr1 (565-609)||(38632253-38632297)
chr1 (555-602)||(32813378-32813425)
chr1 (418-457)||(52145172-52145211)
chr1 (581-609)||(5958948-5958976)
chr1 (581-609)||(50590948-50590976)
chr1 (555-603)||(51898605-51898653)
[»] scaffold0150 (2 HSPs)
scaffold0150 (191-457)||(8527-8793)
scaffold0150 (7-119)||(8865-8977)
[»] chr4 (14 HSPs)
chr4 (549-609)||(41236471-41236531)
chr4 (548-608)||(24995022-24995082)
chr4 (550-609)||(42044284-42044343)
chr4 (551-608)||(48182967-48183024)
chr4 (551-609)||(6034168-6034226)
chr4 (548-608)||(11511378-11511437)
chr4 (553-609)||(54473453-54473509)
chr4 (550-609)||(23608359-23608418)
chr4 (551-598)||(53352492-53352539)
chr4 (555-603)||(29240016-29240064)
chr4 (555-609)||(19670638-19670692)
chr4 (555-609)||(29547881-29547935)
chr4 (555-609)||(55475315-55475369)
chr4 (555-603)||(50526093-50526141)
[»] chr7 (17 HSPs)
chr7 (550-609)||(19329966-19330025)
chr7 (549-603)||(8080299-8080353)
chr7 (549-609)||(32951409-32951469)
chr7 (546-609)||(3434676-3434739)
chr7 (550-609)||(7389513-7389571)
chr7 (550-609)||(36362138-36362197)
chr7 (550-609)||(38837341-38837400)
chr7 (549-609)||(4999430-4999490)
chr7 (549-609)||(36361841-36361901)
chr7 (550-609)||(40957831-40957890)
chr7 (549-609)||(11044302-11044362)
chr7 (555-602)||(46374746-46374793)
chr7 (555-609)||(38044321-38044375)
chr7 (560-609)||(19436114-19436163)
chr7 (555-596)||(39255846-39255887)
chr7 (581-609)||(8238337-8238365)
chr7 (545-609)||(35137657-35137721)
[»] chr2 (19 HSPs)
chr2 (551-609)||(30915587-30915645)
chr2 (545-609)||(17473144-17473208)
chr2 (549-609)||(28381571-28381631)
chr2 (550-609)||(7465652-7465711)
chr2 (542-609)||(10249291-10249358)
chr2 (543-609)||(28863579-28863646)
chr2 (551-609)||(5574418-5574476)
chr2 (551-609)||(13438467-13438525)
chr2 (548-609)||(27864815-27864876)
chr2 (549-609)||(4060809-4060869)
chr2 (549-609)||(40701602-40701662)
chr2 (550-609)||(19930737-19930796)
chr2 (551-609)||(38882729-38882787)
chr2 (551-608)||(32505566-32505623)
chr2 (555-603)||(20700945-20700993)
chr2 (542-609)||(9058604-9058671)
chr2 (555-602)||(40613824-40613871)
chr2 (555-607)||(17823914-17823966)
chr2 (553-609)||(33436020-33436076)
[»] scaffold0237 (1 HSPs)
scaffold0237 (550-609)||(4153-4212)
[»] chr8 (21 HSPs)
chr8 (550-609)||(14548046-14548105)
chr8 (551-609)||(504039-504097)
chr8 (551-609)||(23122515-23122573)
chr8 (550-602)||(42710211-42710263)
chr8 (550-609)||(34012213-34012272)
chr8 (551-609)||(9122309-9122367)
chr8 (551-609)||(12831171-12831229)
chr8 (555-609)||(40423865-40423919)
chr8 (555-602)||(43414503-43414550)
chr8 (551-609)||(1179858-1179916)
chr8 (298-344)||(17016475-17016521)
chr8 (298-344)||(17546912-17546958)
chr8 (7-56)||(17020293-17020342)
chr8 (7-56)||(17550730-17550779)
chr8 (551-603)||(15197463-15197515)
chr8 (304-455)||(17522739-17522890)
chr8 (554-609)||(24307714-24307769)
chr8 (555-609)||(16056323-16056377)
chr8 (555-609)||(32707925-32707979)
chr8 (551-609)||(44507006-44507063)
chr8 (555-603)||(37038609-37038657)
[»] chr6 (9 HSPs)
chr6 (550-609)||(11427742-11427801)
chr6 (550-609)||(17598678-17598737)
chr6 (550-609)||(22880575-22880634)
chr6 (550-609)||(29857951-29858010)
chr6 (550-609)||(32869802-32869861)
chr6 (549-609)||(23128042-23128103)
chr6 (554-609)||(15832701-15832756)
chr6 (555-602)||(31110683-31110730)
chr6 (555-609)||(4231672-4231726)
[»] chr5 (11 HSPs)
chr5 (550-609)||(2740398-2740457)
chr5 (551-609)||(14831938-14831996)
chr5 (551-609)||(35785323-35785381)
chr5 (545-609)||(18520796-18520860)
chr5 (550-609)||(33149555-33149614)
chr5 (551-609)||(31132458-31132516)
chr5 (550-598)||(40145542-40145590)
chr5 (550-597)||(16115249-16115296)
chr5 (563-609)||(36732872-36732918)
chr5 (555-603)||(31009118-31009166)
chr5 (555-603)||(35943814-35943862)
[»] chr3 (16 HSPs)
chr3 (550-609)||(33644324-33644383)
chr3 (551-609)||(53982135-53982193)
chr3 (541-609)||(11095275-11095343)
chr3 (545-609)||(31456813-31456877)
chr3 (550-609)||(48587018-48587077)
chr3 (550-609)||(52629424-52629483)
chr3 (550-609)||(54868812-54868871)
chr3 (551-597)||(49607550-49607596)
chr3 (555-603)||(33118772-33118820)
chr3 (555-602)||(11347844-11347891)
chr3 (555-602)||(26141452-26141499)
chr3 (552-607)||(27714822-27714877)
chr3 (555-605)||(30801655-30801705)
chr3 (552-609)||(36707347-36707404)
chr3 (553-609)||(9563123-9563179)
chr3 (581-609)||(36331277-36331305)
[»] scaffold0321 (1 HSPs)
scaffold0321 (550-609)||(10026-10085)
[»] scaffold1268 (1 HSPs)
scaffold1268 (555-603)||(851-899)
[»] scaffold1267 (1 HSPs)
scaffold1267 (555-603)||(851-899)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 52133773 - 52133275
Alignment:
Q  1 tatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  52133773 tatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgtctcttctgctggaattg 52133674  T
Q  101 ctggctttcttcccacaaatgatgctgatgcaaataacatcgtaggagctgaaggaactttgtactatagatgctcaaaccaatgtgcttatgtcacatg 200  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||   |||||||||||||||||    
T  52133673 ctggctttcttcccgcaaatgatgcagatgccaataacatcgtaggagatgaagtaactttgtactatagatgcttaaacaggtgtgcttatgtcacatg 52133574  T
Q  201 tgatatttcaactcgttgttctggttgcaatcaaactatgaaccatcaaatacattatatcggagagaaggctgttgaagagaacatttcgactgcgaat 300  Q
    |||||  ||||||||||||  |  ||||| ||||  ||||  | |||||||  ||||||| ||| ||||||||||   | ||||||||||||||||||||    
T  52133573 tgatagctcaactcgttgtattaattgcagtcaagttatggcctatcaaatggattatattggaaagaaggctgtccgaaagaacatttcgactgcgaat 52133474  T
Q  301 ggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtagttcaaccaatgtcaaccatatcaagcattactttgctgaacaaattcaata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  52133473 ggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtcgttcagccaatgtcaacaatatcaagcattactttgctgaacaaattcaata 52133374  T
Q  401 tcaaggaggttggtgcattgcaggaaaaggttgttgagatgggaatggatgaggtaaagtatatcattattttctatttatatttgttaaataggtcat 499  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||||| |||||    
T  52133373 tcaaggaggttggtgcgttgcaggaaaaggttgttgagatgggaatggatgaggtaaagtatattgttatttgatatttatatttgttaaatatgtcat 52133275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 27564651 - 27564711
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  27564651 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 27564711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 48716200 - 48716258
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  48716200 gagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 48716258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 552 - 609
Target Start/End: Complemental strand, 37649379 - 37649322
Alignment:
Q  552 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  37649379 agtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 37649322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 26274621 - 26274569
Alignment:
Q  541 tttatttttagagtaatgatacatagacaacctttattaccatacacccttgt 593  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  26274621 tttatttttagagtaatgatacatagacaccctttattcccatacacccttgt 26274569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 38595338 - 38595278
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||    
T  38595338 tagagtaatgatacatagacatccattatttccatacacccttgtacaccccatatattag 38595278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 3000501 - 3000443
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||    
T  3000501 gagtaatgatacatagacatccattatttccatacacccttgtacaccccatatattag 3000443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 41758987 - 41758929
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  41758987 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 41758929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 2582099 - 2582039
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||| ||| ||||||||   ||||||||||||||||| ||||||||||    
T  2582099 tagagtaatgatacataaacaccctttattctaatacacccttgtacacctcatgtattag 2582039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 47452238 - 47452290
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||||||||||||||||||  ||||||| ||||||| ||||||||||||||||    
T  47452238 gagtaatgatacatagacactctttattcccatacatccttgtacaccccatg 47452290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 9474793 - 9474852
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||  |||||||  |||||||||||||||| |||||| |||||    
T  9474793 agagtaatgatacatagacactctttattctcatacacccttgtacatcccatgcattag 9474852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 43316 - 43256
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| | ||||||||   |||||| ||||||||||||||| |||||    
T  43316 tagagtaatgatacatagataccctttattcttatacactcttgtacaccccatgcattag 43256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 609
Target Start/End: Original strand, 38632253 - 38632297
Alignment:
Q  565 agacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||    
T  38632253 agacaccctttattcccatacacccttgtacaccccatgcattag 38632297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Complemental strand, 32813425 - 32813378
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| | |||||| |||||||||||||||||||||||    
T  32813425 aatgttacatagacaccatttattcccatacacccttgtacaccccat 32813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 52145211 - 52145172
Alignment:
Q  418 ttgcaggaaaaggttgttgagatgggaatggatgaggtaa 457  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  52145211 ttgcaagaaaaggttgttgagatgggaatagatgaggtaa 52145172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 609
Target Start/End: Original strand, 5958948 - 5958976
Alignment:
Q  581 catacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||||||||||||    
T  5958948 catacacccttgtacaccccatgtattag 5958976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 609
Target Start/End: Original strand, 50590948 - 50590976
Alignment:
Q  581 catacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||||||||||||    
T  50590948 catacacccttgtacaccccatgtattag 50590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 51898605 - 51898653
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  51898605 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 51898653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 191 - 457
Target Start/End: Complemental strand, 8793 - 8527
Alignment:
Q  191 atgtcacatgtgatatttcaactcgttgttctggttgcaatcaaactatgaaccatcaaatacattatatcggagagaaggctgttgaagagaacatttc 290  Q
    |||||||||||||||  ||||||||||||||  |||||| |    |||||||    ||| || ||||| | ||| | |||| ||||||||| ||| ||||    
T  8793 atgtcacatgtgatagctcaactcgttgttcctgttgcagtagtgctatgaatgtacaagtaaattatgttggaaaaaaggttgttgaagataacgtttc 8694  T
Q  291 gactgcgaatggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtagttcaaccaatgtcaaccatatcaagcattactttgctgaac 390  Q
     | |  |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8693 tattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgatttagtggttcagccaatgtcaaccatatcaagcattactttgctgaac 8594  T
Q  391 aaattcaatatcaaggaggttggtgcattgcaggaaaaggttgttgagatgggaatggatgaggtaa 457  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  8593 aaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggtaa 8527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 8977 - 8865
Alignment:
Q  7 agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtctcttctgctggaattgctggct 106  Q
    |||||||||||| |||| |||||||||||||||||| | ||||||||||| |   |  ||||||| ||||||||| ||| |||  ||| |||||| |||     
T  8977 agtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggcc 8878  T
Q  107 ttcttcccacaaa 119  Q
    |||||||| ||||    
T  8877 ttcttcccgcaaa 8865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 41236531 - 41236471
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  41236531 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 41236471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 608
Target Start/End: Original strand, 24995022 - 24995082
Alignment:
Q  548 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 608  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  24995022 ttagagtaatgatacatagacaccctttattcccatacaccattgtacaccccatgcatta 24995082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 42044284 - 42044343
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  42044284 agagtaatgatacatagacaccctttatttccatacacccttgtacatcccatgcattag 42044343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 48182967 - 48183024
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 608  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||    
T  48182967 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcatta 48183024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 6034226 - 6034168
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  6034226 gagtaatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 6034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 608
Target Start/End: Original strand, 11511378 - 11511437
Alignment:
Q  548 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 608  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||||||| |||| ||||    
T  11511378 ttagagtaatgatacatagaca-catttatttccatacacccttgtacacctcatgcatta 11511437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 54473453 - 54473509
Alignment:
Q  553 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||  ||| |||||||| |||||||||||||||||| |||||||||||    
T  54473453 gtaatgatacatgaacaccctttattcccatacacccttgtacactccatgtattag 54473509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 23608418 - 23608359
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||| || |||||||| |||| |||||    
T  23608418 agagtaatgatacatagacatcctttattcccatacatccctgtacacctcatgcattag 23608359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 598
Target Start/End: Original strand, 53352492 - 53352539
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacacc 598  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  53352492 gagtaatgatacatagacaccctttattttcatacacccttgtacacc 53352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 29240064 - 29240016
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||||||| |||||||| |||||||| |||||||||||||||    
T  29240064 aatgttacatagacaccctttattcccatacactcttgtacaccccatg 29240016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 19670638 - 19670692
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  19670638 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 19670692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 29547881 - 29547935
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  29547881 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 29547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Complemental strand, 55475369 - 55475315
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  55475369 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 55475315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 50526093 - 50526141
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  50526093 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 50526141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 19330025 - 19329966
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  19330025 agagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 19329966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 603
Target Start/End: Original strand, 8080299 - 8080353
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  8080299 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatg 8080353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 32951409 - 32951469
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||    
T  32951409 tagagtaatgatacatagacaccccttattctcatacacccttgtacaccccatgtattag 32951469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 3434739 - 3434676
Alignment:
Q  546 ttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  3434739 tttttgagtaatgatacatagacaccctttattcccatacagccttgtacaccccatgcattag 3434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 7389571 - 7389513
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  7389571 agagtaatgatacatagacatcctttattcccatacaccc-tgtacaccccatgtattag 7389513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 36362197 - 36362138
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  36362197 agagtaatgatacatagacaccctttattctcatacacccttgtacatcccatgtattag 36362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 38837400 - 38837341
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  38837400 agagtaatgatacatagacaccctttatttccatacacccttgtacatcccatgcattag 38837341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 4999430 - 4999490
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  4999430 tagagtaatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 4999490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 36361841 - 36361901
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||  |||||||||||    
T  36361841 tagagtaatgatacatagacaccctttattctcatacacccttgtacattccatgtattag 36361901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 40957890 - 40957831
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||||||||| |||||    
T  40957890 agagtaatgatacatagacacccattattttcatacacccttgtacaccccatgcattag 40957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 11044362 - 11044302
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||||  |||||||  |||||||| ||||||||| |||| |||||    
T  11044362 tagagtaatgatacatagacactctttattttcatacacctttgtacacctcatgcattag 11044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 46374746 - 46374793
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| | |||||| |||||||||||||||||||||||    
T  46374746 aatgttacatagacaccatttattcccatacacccttgtacaccccat 46374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Complemental strand, 38044375 - 38044321
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  38044375 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 38044321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 609
Target Start/End: Original strand, 19436114 - 19436163
Alignment:
Q  560 tacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  19436114 tacatagacaccatttattctcatacacccttgtacaccccatgcattag 19436163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 596
Target Start/End: Original strand, 39255846 - 39255887
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtaca 596  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  39255846 aatgttacatagacaccctttattatcatacacccttgtaca 39255887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 609
Target Start/End: Complemental strand, 8238365 - 8238337
Alignment:
Q  581 catacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||||||||||||    
T  8238365 catacacccttgtacaccccatgtattag 8238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 35137721 - 35137657
Alignment:
Q  545 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||| |||||| | | ||| ||  |||||||||||||||| |||||| |||||    
T  35137721 tttttagagtaatgatccatagataccatttgttctcatacacccttgtacatcccatgcattag 35137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 30915645 - 30915587
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  30915645 gagtaatgatacatagacatccattatttccatacacccttgtacaccccatgtattag 30915587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 17473208 - 17473144
Alignment:
Q  545 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  17473208 ttttttgagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 17473144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 28381571 - 28381631
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||    
T  28381571 tagagtaatgatacatagacaccctttattcccatacatccttgtacaccccatatattag 28381631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 7465652 - 7465711
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  7465652 agagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 7465711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 609
Target Start/End: Original strand, 10249291 - 10249358
Alignment:
Q  542 ttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  10249291 ttattattggagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 10249358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 28863646 - 28863579
Alignment:
Q  543 tattttta-gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  28863646 tatttttatgagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 28863579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 5574418 - 5574476
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  5574418 gagtaatgatacatagacaccctttattcccatacacccttgtacacgccatgcattag 5574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 13438525 - 13438467
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  13438525 gagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 13438467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 27864876 - 27864815
Alignment:
Q  548 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||| |||| ||||||||  |||||||||||||||| ||||||||||||    
T  27864876 ttagagtaatgatacattgacaccctttattctcatacacccttgtacatcccatgtattag 27864815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 4060869 - 4060809
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| |||||    
T  4060869 tagagtaatgatacataaacatcttttatttccatacacccttgtacaccccatgcattag 4060809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 40701662 - 40701602
Alignment:
Q  549 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||| ||| |||||    
T  40701662 tagagtaatgatacatagacaccttttatttccatacacccttgtacacccgatgcattag 40701602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 19930737 - 19930796
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||| |||| |||||    
T  19930737 agagtaatgatacatagacaccttttattcccatacacccttgtacacctcatgcattag 19930796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 38882729 - 38882787
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||| | | |||||| |||||||||||||||||||||||| |||||    
T  38882729 gagtaatgatacatagagaccatttattcccatacacccttgtacaccccatgcattag 38882787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 608
Target Start/End: Original strand, 32505566 - 32505623
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 608  Q
    |||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||    
T  32505566 gagtaatgatacatagacactctttattctcatacacccttgtacaccccatgcatta 32505623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 20700993 - 20700945
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  20700993 aatgttacatagacaccctttattcccatacacccttgtacaccccatg 20700945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 609
Target Start/End: Complemental strand, 9058671 - 9058604
Alignment:
Q  542 ttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||| ||||||||||| ||| | | |||||||| |||||||| ||||||||||||||| |||||    
T  9058671 ttatttttcgagtaatgatatataaataccctttattcccatacactcttgtacaccccatgcattag 9058604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 40613824 - 40613871
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  40613824 aatgttacatagacaccctttattcccatacacccttgtacaccccat 40613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 607
Target Start/End: Complemental strand, 17823966 - 17823914
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtatt 607  Q
    |||| |||||||||| ||||||||  |||||||||||||||||||||| ||||    
T  17823966 aatgttacatagacatcctttatttacatacacccttgtacaccccatatatt 17823914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 609
Target Start/End: Original strand, 33436020 - 33436076
Alignment:
Q  553 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||| |||||||| | ||||||  |||||||||||||||||| |||| |||||    
T  33436020 gtaatgatgcatagacaccttttattctcatacacccttgtacacctcatgcattag 33436076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 4212 - 4153
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  4212 agagtaatgatacatagacaccatttattcccatacacccttgtacaccccatgcattag 4153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 14548105 - 14548046
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  14548105 agagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 14548046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 504039 - 504097
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  504039 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 504097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 23122515 - 23122573
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  23122515 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 23122573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 550 - 602
Target Start/End: Original strand, 42710211 - 42710263
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  42710211 agagtaatgatacacagacaccctttattcccatacacccttgtacaccccat 42710263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 34012213 - 34012272
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| ||||||||  | ||||||||||||||||||||| |||||    
T  34012213 agagtaatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattag 34012272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 9122367 - 9122309
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||    
T  9122367 gagtaatgatacatagacattctttattcccatacactcttgtacaccccatgcattag 9122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 12831229 - 12831171
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  12831229 gagtaatgatacatagacaccatttattctcatacacccttgtacaccccatgcattag 12831171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 40423865 - 40423919
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  40423865 aatgatacatagacaccttttattcccatacacccttgtacacctcatgtattag 40423919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 43414503 - 43414550
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  43414503 aatgttacatagacaccctttattgccatacacccttgtacaccccat 43414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 1179858 - 1179916
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||| ||||||| |||||||| ||||| | |||||||||||||||| |||||    
T  1179858 gagtaatgatagatagacatcctttattcccatatatccttgtacaccccatgcattag 1179916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 17016521 - 17016475
Alignment:
Q  298 aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt 344  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||    
T  17016521 aatggttttgtgaaagatgttgtgactttcatggtcatggatgattt 17016475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 17546958 - 17546912
Alignment:
Q  298 aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt 344  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||    
T  17546958 aatggttttgtgaaagatgttgtgactttcatggtcatggatgattt 17546912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17020293 - 17020342
Alignment:
Q  7 agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga 56  Q
    |||||||||||| |||| ||| |||||||||||||| |||||||||||||    
T  17020293 agtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga 17020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17550730 - 17550779
Alignment:
Q  7 agtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga 56  Q
    |||||||||||| |||| ||| |||||||||||||| |||||||||||||    
T  17550730 agtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga 17550779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 15197515 - 15197463
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||||||||||||||||||   |||||| ||||||||||||||||||| ||||    
T  15197515 gagtaatgatacatagacactttttattcccatacacccttgtacacctcatg 15197463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 455
Target Start/End: Original strand, 17522739 - 17522890
Alignment:
Q  304 tttgtgaaagatgttgtgacatttatggtgatggatgatttagtagttcaaccaatgtcaaccatatcaagcattactttgctgaacaaattcaatatca 403  Q
    ||||||||||||||  | || || ||||| ||||||||||| ||  |||| || |||||||| ||||| ||||| ||  |||| ||||| || ||| | |    
T  17522739 tttgtgaaagatgtcataactttcatggttatggatgatttggtcattcagcccatgtcaactatatctagcatcacactgctcaacaagtttaatgtga 17522838  T
Q  404 aggaggttggtgcattgcaggaaaaggttgttgagatgggaatggatgaggt 455  Q
    | ||| ||||| |  |||| ||||| || ||||||||||| |||||||||||    
T  17522839 aagagattggtactctgcaagaaaaagtggttgagatggggatggatgaggt 17522890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 554 - 609
Target Start/End: Original strand, 24307714 - 24307769
Alignment:
Q  554 taatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  24307714 taatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 24307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 16056323 - 16056377
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  16056323 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 16056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 32707925 - 32707979
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  32707925 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 32707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 44507006 - 44507063
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||   ||||||  ||||||||||||||||||||||| |||||    
T  44507006 gagtaatgatacatagacata-tttattctcatacacccttgtacaccccatgcattag 44507063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 37038657 - 37038609
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  37038657 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 37038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 11427801 - 11427742
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  11427801 agagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 11427742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 17598737 - 17598678
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  17598737 agagtaatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 17598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 22880575 - 22880634
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||    
T  22880575 agagtaatgatacatatacaccatttattcccatacacccttgtacaccccatgtattag 22880634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 29858010 - 29857951
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  29858010 agagtaatgatacatagacaccatttattcccatacacccttgtacaccccatgcattag 29857951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 32869861 - 32869802
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  32869861 agagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 32869802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 23128042 - 23128103
Alignment:
Q  549 tagagtaatgatacatagacaaccttt-attaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| |||||    
T  23128042 tagagtaatgatacatagagaaccttttatttccatacacccttgtacatcccatgcattag 23128103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 554 - 609
Target Start/End: Complemental strand, 15832756 - 15832701
Alignment:
Q  554 taatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||| |||||| |||||||| | |||||||||||||||||||||| |||||    
T  15832756 taatgatacgtagacaccctttattccaatacacccttgtacaccccatgcattag 15832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 31110683 - 31110730
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  31110683 aatgttacatagacatcctttatttccatacacctttgtacaccccat 31110730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Complemental strand, 4231726 - 4231672
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  4231726 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 4231672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 2740457 - 2740398
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  2740457 agagtaatgatacatagacaccctttattcccatacacccttgtacatcccatgcattag 2740398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 14831996 - 14831938
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  14831996 gagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 14831938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 35785381 - 35785323
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  35785381 gagtaatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 35785323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 18520796 - 18520860
Alignment:
Q  545 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| |||||||||||||||||||| ||||||||  |||||||||||||||||| |||| |||||    
T  18520796 ttttaagagtaatgatacatagacaccctttattttcatacacccttgtacacctcatgcattag 18520860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 33149555 - 33149614
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| ||||||||  | ||||||||||||||||||||| |||||    
T  33149555 agagtaatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattag 33149614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 31132516 - 31132458
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||| ||| ||||||||  |||||||||||||||||| |||| |||||    
T  31132516 gagtaatgatacataaacaccctttattttcatacacccttgtacacctcatgcattag 31132458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 598
Target Start/End: Complemental strand, 40145590 - 40145542
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacacc 598  Q
    |||||||||||||||||||| ||||||||  |||| |||||||||||||    
T  40145590 agagtaatgatacatagacaccctttattctcatatacccttgtacacc 40145542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 597
Target Start/End: Original strand, 16115249 - 16115296
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacac 597  Q
    |||||||||||||||||||| ||||||||  ||||||| |||||||||    
T  16115249 agagtaatgatacatagacaccctttattctcatacactcttgtacac 16115296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 609
Target Start/End: Original strand, 36732872 - 36732918
Alignment:
Q  563 atagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  36732872 atagacaccctttattcccatacacccttgtacacctcatgcattag 36732918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Complemental strand, 31009166 - 31009118
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||||||| ||||||||  |||||||| ||||||||||||||    
T  31009166 aatgttacatagacaccctttattctcatacacctttgtacaccccatg 31009118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 35943814 - 35943862
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| ||||||||||   |||||| ||||||||||||||||||||||||    
T  35943814 aatgttacatagacacattttatttccatacacccttgtacaccccatg 35943862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 33644383 - 33644324
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||    
T  33644383 agagtaatgatacatagacaccctttattcccatacacccttatacaccccatgcattag 33644324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 53982193 - 53982135
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  53982193 gagtaatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattag 53982135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 541 - 609
Target Start/End: Original strand, 11095275 - 11095343
Alignment:
Q  541 tttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||| ||| |||||||||||||||||||| ||||||||  ||||||||||||||||||| ||| |||||    
T  11095275 tttaatttaagagtaatgatacatagacaccctttattctcatacacccttgtacacccgatgcattag 11095343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 31456877 - 31456813
Alignment:
Q  545 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||||||| |||||    
T  31456877 ttttttgagtaatgatacataaacaccctttattcccatgcacccttgtacaccccatgcattag 31456813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 48587018 - 48587077
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||| |||||| |||||    
T  48587018 agagtaatgatacatagacaccctttattcccatatacccttgtacatcccatgcattag 48587077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 52629483 - 52629424
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||||    
T  52629483 agagtaatgatacatagacacccattatttccatacacccttgtacatcccatgcattag 52629424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 54868812 - 54868871
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||| ||| |||||    
T  54868812 agagtaatgatacatagacaccttttatttccatacacccttgtacaccctatgcattag 54868871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 49607596 - 49607550
Alignment:
Q  551 gagtaatgatacatagacaacctttattaccatacacccttgtacac 597  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  49607596 gagtaatgatacatagacaccctttattcccatacacccttgtacac 49607550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 33118772 - 33118820
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| ||| |||||| |||||||| ||||||||||||||||||||||||    
T  33118772 aatgttacgtagacaccctttatttccatacacccttgtacaccccatg 33118820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 11347844 - 11347891
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  11347844 aatggtacatagacaccctttattcccatacacccttatacaccccat 11347891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 26141452 - 26141499
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccat 602  Q
    |||| |||||||||| |||||||| |||||||| ||||||||||||||    
T  26141452 aatgttacatagacaccctttatttccatacactcttgtacaccccat 26141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 607
Target Start/End: Original strand, 27714822 - 27714877
Alignment:
Q  552 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatt 607  Q
    |||||||||||||| |||  |||||||  | |||||||||||||||||||||||||    
T  27714822 agtaatgatacatatacactctttattctcgtacacccttgtacaccccatgtatt 27714877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 605
Target Start/End: Original strand, 30801655 - 30801705
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatgta 605  Q
    |||| |||||||||| | ||||||  |||||||||||||||||||||||||    
T  30801655 aatgttacatagacaccttttattctcatacacccttgtacaccccatgta 30801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 36707347 - 36707404
Alignment:
Q  552 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||| | |||||| |||||||  |||||||||| |||| |||||    
T  36707347 agtaatgatacatagacaccttttattcccatacattcttgtacacctcatgcattag 36707404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 609
Target Start/End: Complemental strand, 9563179 - 9563123
Alignment:
Q  553 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    ||||||||||||||| | |||||||| ||||||||| ||||||| | |||| |||||    
T  9563179 gtaatgatacatagataccctttattcccatacacctttgtacaactcatgcattag 9563123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 609
Target Start/End: Original strand, 36331277 - 36331305
Alignment:
Q  581 catacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||||||||||||    
T  36331277 catacacccttgtacaccccatgtattag 36331305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Original strand, 10026 - 10085
Alignment:
Q  550 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 609  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||    
T  10026 agagtaatgatacatagacacccattatttccatacacccttgtacaccctatgcattag 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 851 - 899
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||| ||| |||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccatg 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 603
Target Start/End: Original strand, 851 - 899
Alignment:
Q  555 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 603  Q
    |||| |||||| ||| |||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccatg 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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