View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_high_15 (Length: 217)
Name: NF12783_high_15
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 39700456 - 39700386
Alignment:
| Q |
144 |
tagtttgatgtagtttaccagcaaagcaacacaagaagttgtaaaggcaacagagaaagagccaaagaaag |
214 |
Q |
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| T |
39700456 |
tagtttgatgtagtttaccagcaaagcaacacaagaagttgtaaaggcaacagagaaagagccaaagaaag |
39700386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 39700544 - 39700479
Alignment:
| Q |
50 |
tagattaagcagaaaacaaaagaaaatgcttgcataannnnnnnnggtgaatggaaaatgcttgca |
115 |
Q |
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| T |
39700544 |
tagattaagcagaaaacaaaagaaaatgcttgcataattttttttggtgaatggaaaatgcttgca |
39700479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 39691257 - 39691197
Alignment:
| Q |
154 |
tagtttaccagcaaagcaacacaagaagttgtaaaggcaacagagaaagagccaaagaaag |
214 |
Q |
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| T |
39691257 |
tagtttaccagcaaagcaacacaagaagaagcaaaggcaactaagaatgagccaaagaaag |
39691197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 39700590 - 39700561
Alignment:
| Q |
13 |
caaaggaaacacttcatctgaaaatctaac |
42 |
Q |
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| T |
39700590 |
caaaggaaacacttcatctgaaaatctaac |
39700561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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