View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_low_12 (Length: 222)
Name: NF12783_low_12
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41620627 - 41620420
Alignment:
| Q |
1 |
ctgaaacctcttcaaccatcactggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcagg |
100 |
Q |
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| T |
41620627 |
ctgaaacctcttcaaccatcactggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcattgaccactggatcagg |
41620528 |
T |
|
| Q |
101 |
ttgtgccacaccatagtagttttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacat |
200 |
Q |
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| T |
41620527 |
ttgtgccacaccatagtagttttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacat |
41620428 |
T |
|
| Q |
201 |
gaattatc |
208 |
Q |
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|||||||| |
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| T |
41620427 |
gaattatc |
41620420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 41623975 - 41623769
Alignment:
| Q |
2 |
tgaaacctcttcaaccatcactggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggt |
101 |
Q |
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| T |
41623975 |
tgaaacttctttcaccgtcactggctgaatgtcattccaactccaagttccgttgcaaaaatgtttatcacctcgtgtctcaatgacaactggatcagct |
41623876 |
T |
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| Q |
102 |
tgtgccacaccatagtagttttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacatg |
201 |
Q |
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| T |
41623875 |
tctgtcaagtcatcgtagtttttttctattaaaggagtttgtagttgtatggaagaagagtcgaattcgacgacatggttgacccaattagattcatatg |
41623776 |
T |
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| Q |
202 |
aattatc |
208 |
Q |
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| T |
41623775 |
agttatc |
41623769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 41626919 - 41626791
Alignment:
| Q |
19 |
tcactggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagta |
118 |
Q |
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||||||| ||||| |||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||| |||||||||| || || || ||||||| |
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| T |
41626919 |
tcactggttgaatgtcattccaactccaagttccgttgtgaaaatggttagcaccttgtgtctcgatgacaactggatcagcttctgtcaagtcatagta |
41626820 |
T |
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| Q |
119 |
gttttgctctactaaaggagtttgtagtt |
147 |
Q |
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||||| |||| ||||||| ||| ||||| |
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| T |
41626819 |
gtttttttctattaaaggactttttagtt |
41626791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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