View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12783_low_13 (Length: 218)

Name: NF12783_low_13
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12783_low_13
NF12783_low_13
[»] chr8 (2 HSPs)
chr8 (53-205)||(31887354-31887506)
chr8 (18-53)||(31887218-31887253)
[»] chr3 (1 HSPs)
chr3 (116-205)||(25737055-25737144)
[»] chr5 (1 HSPs)
chr5 (103-200)||(20863543-20863640)
[»] chr1 (1 HSPs)
chr1 (145-205)||(44785309-44785369)
[»] chr4 (1 HSPs)
chr4 (151-197)||(12702523-12702569)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 31887354 - 31887506
Alignment:
Q  53 tccatttatctatatcagtatgcgtggaaggagtagtagtttgagttctggtttcttttgcattcttccagctacttagaaaagcctccgcacgtgttcc 152  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  31887354 tccatttatctatatcagtatgcgtggaaggagtggtagtttgatttcgggtatcttttgcattcttccagctacttagaaaagcctccgtgcgtgttcc 31887453  T
Q  153 aatctgttgagtagtttccacaatattactccacactttgttgtttctgtgct 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31887454 aatctgttgagtagtttccacaatattattccacactttgttgtttctgtgct 31887506  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 31887218 - 31887253
Alignment:
Q  18 aattggacccatgtagtctgtcctattacaaagttt 53  Q
    |||||||||||||||||| |||||||||||||||||    
T  31887218 aattggacccatgtagtccgtcctattacaaagttt 31887253  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 25737144 - 25737055
Alignment:
Q  116 tcttccagctacttagaaaagcctccgcacgtgttccaatctgttgagtagtttccacaatattactccacactttgttgtttctgtgct 205  Q
    |||||||||||||||||||||||||| |  ||| |||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  25737144 tcttccagctacttagaaaagcctccacgtgtgctccaatatgttgagtagtctccacaacattattccacactttgttgtttctgtgct 25737055  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 20863640 - 20863543
Alignment:
Q  103 gtttcttttgcattcttccagctacttagaaaagcctccgcacgtgttccaatctgttgagtagtttccacaatattactccacactttgttgtttct 200  Q
    |||||||  |||||| |||||||||| |||||| ||| ||| || |  ||||||||||||||||||||||||| |||  ||||||||||||| |||||    
T  20863640 gtttcttgcgcattcatccagctactcagaaaatccttcgcgcgagcaccaatctgttgagtagtttccacaacattgttccacactttgttttttct 20863543  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 44785369 - 44785309
Alignment:
Q  145 cgtgttccaatctgttgagtagtttccacaatattactccacactttgttgtttctgtgct 205  Q
    |||| ||||||||||||||||||||||| || |||| |||||| ||| |||||||| ||||    
T  44785369 cgtgctccaatctgttgagtagtttccataacattattccacaatttattgtttctctgct 44785309  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 12702523 - 12702569
Alignment:
Q  151 ccaatctgttgagtagtttccacaatattactccacactttgttgtt 197  Q
    |||||||| ||||| ||||| ||||||||| ||||||||||||||||    
T  12702523 ccaatctgctgagttgtttctacaatattattccacactttgttgtt 12702569  T

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