View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_low_2 (Length: 428)
Name: NF12783_low_2
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 29668834 - 29669234
Alignment:
| Q |
12 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
111 |
Q |
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| T |
29668834 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
29668933 |
T |
|
| Q |
112 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29668934 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaa |
29669033 |
T |
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| Q |
212 |
agttgaggagaaaataatcaaggagttaaccactgttcttgaggaaactcgaggaggggaaaagcggaaatggacagaggatccgcttgatttcagtgaa |
311 |
Q |
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| T |
29669034 |
agttgaggagaaaataatcaaggagttaaccactgttcttgaggaaactcgaggaggggaaaagcggaaatggacagaggatccgcttgatttcagtgaa |
29669133 |
T |
|
| Q |
312 |
gcggatcaaatggtttatttgaaagcagcattggcggaaacactgcgattgtatccatcagtgccgcaggatatcaagcaggcggttgtggacgatgttt |
411 |
Q |
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| T |
29669134 |
gcggatcaaatggtttatttgaaagcagcattggcggaaacactgcgtttgtatccatcagtgccgcaggatatcaagcaggcggttgtggacgatgttt |
29669233 |
T |
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| Q |
412 |
t |
412 |
Q |
| |
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| |
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| T |
29669234 |
t |
29669234 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
135 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
196 |
Q |
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||||||||||| |||||| | ||||||||||||||||| | ||||||||||| ||| |||| |
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| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
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