View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_low_3 (Length: 425)
Name: NF12783_low_3
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 52686756 - 52686489
Alignment:
| Q |
17 |
agaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattgacatgaacaatttacagtttattgat |
116 |
Q |
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| T |
52686756 |
agaatgttgtgagtttgtgacacatcgcttaaacaaaatcaatataaattcattgtcaattaacattcgtattaacatgaacaatttacagtttattgat |
52686657 |
T |
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| Q |
117 |
atttttaggtaaagaaattaactcattttcccataagtttatctaaatatcaaccatatgaagttaaattaattgctaccaaactattttgattatatga |
216 |
Q |
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| T |
52686656 |
atttttaggtaaagaaattaactcattttcccataaatttatctaaatataaaccatatgaagtta----aattgctaccaaactattttgattatatga |
52686561 |
T |
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| Q |
217 |
gtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaatatc |
288 |
Q |
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| T |
52686560 |
gtttctacactataaattatccacttaatataagacatacagatacatgtttctattctaaagaaaaatatc |
52686489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 52686460 - 52686363
Alignment:
| Q |
317 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaagaagattagcactcactttcatacacgtacaagtgtacaacaacatcactaacctatg |
415 |
Q |
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| T |
52686460 |
cagacgaaggctattctgatgtgcaagtgcaacaaaacaaaga-gattaacactcactttcatacacgtacaagtgtacaacaacaccactaacctatg |
52686363 |
T |
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