View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12783_low_4 (Length: 379)

Name: NF12783_low_4
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12783_low_4
NF12783_low_4
[»] chr3 (8 HSPs)
chr3 (320-361)||(4871720-4871761)
chr3 (249-311)||(4826637-4826694)
chr3 (320-361)||(4845961-4846002)
chr3 (12-53)||(4856669-4856711)
chr3 (12-53)||(4878404-4878446)
chr3 (21-53)||(4826597-4826629)
chr3 (279-311)||(4835390-4835422)
chr3 (279-311)||(4837536-4837568)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 4871761 - 4871720
Alignment:
Q  320 tgaacatttttaatcatcaactagttttccaaatgcctggaa 361  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4871761 tgaacatttttaatcatcaactagttttccaaatgcatggaa 4871720  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 4826694 - 4826637
Alignment:
Q  249 tgcaaacaagtgggagagatagagccaattaataatactaaatgggcttgttgtgtggaaaat 311  Q
    ||||||||||||| |||||||||||||||    |||||||||||| |||||||||||||||||    
T  4826694 tgcaaacaagtgg-agagatagagccaat----aatactaaatggtcttgttgtgtggaaaat 4826637  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 4846002 - 4845961
Alignment:
Q  320 tgaacatttttaatcatcaactagttttccaaatgcctggaa 361  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  4846002 tgaacattattaatcatcaactagttttccaaatgcatggaa 4845961  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 4856711 - 4856669
Alignment:
Q  12 aaaggatag-taggtactgatcatcaactagtagcaaatacat 53  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  4856711 aaaggataggtagggactgatcatcaactagtagcaaatacat 4856669  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 4878446 - 4878404
Alignment:
Q  12 aaaggatag-taggtactgatcatcaactagtagcaaatacat 53  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  4878446 aaaggataggtagggactgatcatcaactagtagcaaatacat 4878404  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 4826629 - 4826597
Alignment:
Q  21 taggtactgatcatcaactagtagcaaatacat 53  Q
    |||||||||||||||||| ||||||||||||||    
T  4826629 taggtactgatcatcaacaagtagcaaatacat 4826597  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 4835422 - 4835390
Alignment:
Q  279 aataatactaaatgggcttgttgtgtggaaaat 311  Q
    ||||||||||||||| |||||||||||||||||    
T  4835422 aataatactaaatggtcttgttgtgtggaaaat 4835390  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 4837568 - 4837536
Alignment:
Q  279 aataatactaaatgggcttgttgtgtggaaaat 311  Q
    ||||||||||||||| |||||||||||||||||    
T  4837568 aataatactaaatggtcttgttgtgtggaaaat 4837536  T

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