View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_low_6 (Length: 310)
Name: NF12783_low_6
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 35073728 - 35073438
Alignment:
| Q |
1 |
aaacacatatcaggtatcaaataacannnnnnnctccttccaacttttgtttttgtgtagctactcaatcaaactaccaaaatattcgcgacattagagc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073728 |
aaacacatatcaggtatcaaataacatttttttctccttccaacttttgtttttgtgtagctactcaatcaaactaccaaaatattcgcgacattagagc |
35073629 |
T |
|
| Q |
101 |
atgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073628 |
atgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaag |
35073529 |
T |
|
| Q |
201 |
ctttgtatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaa |
291 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073528 |
ttttttatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaa |
35073438 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 38160024 - 38160109
Alignment:
| Q |
206 |
tatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaa |
291 |
Q |
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||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| || ||||| || || |||||||| ||||||| |
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| T |
38160024 |
tatacctgcatactcaggtgccaaatatccaaatgttccagccaaccttgtctcgacggaatatttgccatccggtgcatttttaa |
38160109 |
T |
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