View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12783_low_7 (Length: 302)

Name: NF12783_low_7
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12783_low_7
NF12783_low_7
[»] chr7 (1 HSPs)
chr7 (12-285)||(44501197-44501470)
[»] chr3 (9 HSPs)
chr3 (16-278)||(20994819-20995083)
chr3 (171-226)||(20977477-20977532)
chr3 (162-275)||(20981806-20981921)
chr3 (147-226)||(2996371-2996450)
chr3 (73-226)||(20949493-20949649)
chr3 (153-226)||(45856777-45856850)
chr3 (162-276)||(45870386-45870502)
chr3 (97-223)||(20948805-20948934)
chr3 (153-221)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (159-278)||(3978166-3978287)
[»] chr5 (2 HSPs)
chr5 (62-136)||(7976609-7976683)
chr5 (137-284)||(38142015-38142164)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 44501197 - 44501470
Alignment:
Q  12 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  44501197 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaatccttt 44501296  T
Q  112 tgagtaggtgaaactccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501297 tgagtaggtgaaactccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 44501396  T
Q  212 gaatatcttgtaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctg 285  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501397 gaatatcttgaaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctg 44501470  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 20994819 - 20995083
Alignment:
Q  16 atgaaaatatgctaggcggaatttgtgcattgtcagcaag-gacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttga 114  Q
    ||||||||| |||| | |||||||| ||| ||||| |||| ||||| ||||  | || ||||||| |||||| |||||||  ||||||||||| |||| |    
T  20994819 atgaaaataagctatgaggaatttgcgcaatgtca-caagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatctttttaa 20994917  T
Q  115 gtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 211  Q
    ||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| ||||||||||||| |  |    
T  20994918 gt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggt 20995014  T
Q  212 gaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaagacgtttccaaagatcctt 278  Q
    |||||||||| ||||  |||| |||  |  ||||  | |||| ||||||||||||||||||||||||||    
T  20995015 gaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatcctt 20995083  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  171 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 226  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 20981806 - 20981921
Alignment:
Q  162 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 259  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| |||||||    
T  20981806 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaa 20981905  T
Q  260 gacgtttccaaagatc 275  Q
    ||||||||||||||||    
T  20981906 gacgtttccaaagatc 20981921  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  147 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 226  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 20949649 - 20949493
Alignment:
Q  73 gctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagat 169  Q
    ||||||| ||||||  ||||||  ||||||||||||||||||||| ||||  ||| || |||||| ||||  ||| ||| | | |||  | || || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  170 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 226  Q
    |||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 45856777 - 45856850
Alignment:
Q  153 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 226  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagt 45856850  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 45870386 - 45870502
Alignment:
Q  162 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 259  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  260 gacgtttccaaagatcc 276  Q
    |||||||||||||||||    
T  45870486 gacgtttccaaagatcc 45870502  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  97 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 193  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  194 cttagacacgaatttattgaatatcttgta 223  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  153 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 221  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 3978287 - 3978166
Alignment:
Q  159 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcag 256  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| ||||||||||||  | |||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  257 gaagacgtttccaaagatcctt 278  Q
    ||||||||||||||||||||||    
T  3978187 gaagacgtttccaaagatcctt 3978166  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 7976609 - 7976683
Alignment:
Q  62 aagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgacc 136  Q
    ||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  7976609 aagtcctaaccgctggacattgtgtgaaatagcataattcacaatccttttgagtaagtgaggctctaagcgacc 7976683  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 38142015 - 38142164
Alignment:
Q  137 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 235  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  236 tgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatct 284  Q
    |||||||| |  |||||| ||||||||| ||||||| |||||| |||||||    
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatccctccatct 38142164  T

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