View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12783_low_8 (Length: 248)
Name: NF12783_low_8
Description: NF12783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12783_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 6989213 - 6989446
Alignment:
| Q |
21 |
gtacattcattcaaacattagtacagcaaataaataattcaactgttttcttattgaattagtgacggaaaa--------------aatgaaatccgtct |
106 |
Q |
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| T |
6989213 |
gtacattcattcaaacattagtacagcaaataaataattgaactgttttcttattgaattagtgacggaaaatttgagacggaaaaaatgaaatccgtct |
6989312 |
T |
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| Q |
107 |
ctaatttgttcggtaattcaaccnnnnnnnagtagagatggaattaaagagtaaagataaaaggattgaaattaattattaccaatattagaaaaagaat |
206 |
Q |
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| T |
6989313 |
ctaatttggtcggtaattcaaccttcttttagtagagatggaattaaagagtaaagataaaaggattgaaattaattattaccaatattagaaaaagaat |
6989412 |
T |
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| Q |
207 |
cagaaaatccaggtcgtggtcgtctgcctatgct |
240 |
Q |
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| T |
6989413 |
cagaaaatccaggtcgtggtcgtctgcctctgct |
6989446 |
T |
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