View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12784_high_1 (Length: 685)
Name: NF12784_high_1
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12784_high_1 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 1132 - 538
Alignment:
| Q |
17 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1132 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
1033 |
T |
|
| Q |
117 |
actttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatggga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1032 |
actttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatggga |
933 |
T |
|
| Q |
217 |
cctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
932 |
cctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttag |
833 |
T |
|
| Q |
317 |
ctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
832 |
ctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctga |
733 |
T |
|
| Q |
417 |
tttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttaga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
732 |
tttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttaga |
633 |
T |
|
| Q |
517 |
cccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
632 |
cccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 8786 - 8191
Alignment:
| Q |
17 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8786 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
8687 |
T |
|
| Q |
117 |
actttgtcaaaat-cgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatggg |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8686 |
actttgtcaaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatggg |
8587 |
T |
|
| Q |
216 |
acctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatata |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8586 |
acctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaattta |
8487 |
T |
|
| Q |
316 |
gctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8486 |
gctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctg |
8387 |
T |
|
| Q |
416 |
atttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8386 |
atttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttag |
8287 |
T |
|
| Q |
516 |
acccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8286 |
acccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
625 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
679 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
625 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
679 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 6507107 - 6506513
Alignment:
| Q |
17 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507107 |
taaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacaca |
6507008 |
T |
|
| Q |
117 |
actttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatggga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6507007 |
actttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatggga |
6506908 |
T |
|
| Q |
217 |
cctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6506907 |
cctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttag |
6506808 |
T |
|
| Q |
317 |
ctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506807 |
ctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctga |
6506708 |
T |
|
| Q |
417 |
tttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttaga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6506707 |
tttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttaga |
6506608 |
T |
|
| Q |
517 |
cccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6506607 |
cccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 6521630 - 6522161
Alignment:
| Q |
19 |
aacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaac |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
6521630 |
aacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaac |
6521729 |
T |
|
| Q |
119 |
tttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacc |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
6521730 |
attgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacc |
6521829 |
T |
|
| Q |
219 |
tgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagct |
318 |
Q |
| |
|
||| ||| |||||| | ||||||||||| || || ||| ||| | |||| | |||| ||| ||| ||| ||||| ||||| |||| |
|
|
| T |
6521830 |
tgcttattttgtttggaatacaaacaacgcaacaaatgaggt------tgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagct |
6521923 |
T |
|
| Q |
319 |
gcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatt |
418 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
6521924 |
gcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatt |
6522023 |
T |
|
| Q |
419 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
518 |
Q |
| |
|
||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| |||||| ||| |||||| |||| || ||||||| |
|
|
| T |
6522024 |
tgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgttagacc |
6522117 |
T |
|
| Q |
519 |
cagttgttatttgagatatgaaaccaattcacttttctatcaac |
562 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6522118 |
cagttgtaatttgagatatgaaaccaattcattcttctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 586
Target Start/End: Complemental strand, 6513010 - 6512451
Alignment:
| Q |
15 |
aataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaaca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | | |||||| ||| | |||||||| |
|
|
| T |
6513010 |
aataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaaca |
6512911 |
T |
|
| Q |
115 |
caactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgg |
214 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| || || || | |||||||||||||| |||| ||||||||||||| ||| | ||||||| |
|
|
| T |
6512910 |
caactttgtcaaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaacta |
6512811 |
T |
|
| Q |
215 |
gacctgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatat |
314 |
Q |
| |
|
||||| | | ||||| |||| | || || ||||| |||| ||||||||||||||| ||||||||||| ||| ||||||||| ||||| |
|
|
| T |
6512810 |
gacctttttatttaggatggagtttgaacaatgctacaaatgaag------atgaatttgataaagtactgaaaaatttattggataatttaagaaatag |
6512717 |
T |
|
| Q |
315 |
agctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct |
414 |
Q |
| |
|
|||| |||| || || |||||||||||||||||||| |||| ||||| | |||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
6512716 |
agcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacct |
6512617 |
T |
|
| Q |
415 |
gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttctta |
514 |
Q |
| |
|
||||||||| || ||||||| ||||| ||||||| ||||||||||||| |||||||| |||||| |||| || || |||| |||| || ||| |
|
|
| T |
6512616 |
gatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttg------ggtgctagaattgtta |
6512523 |
T |
|
| Q |
515 |
gacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
586 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||| ||||||| |
|
|
| T |
6512522 |
gaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 581
Target Start/End: Complemental strand, 6517408 - 6516855
Alignment:
| Q |
16 |
ataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacac |
115 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || ||||||||| | ||||| ||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
6517408 |
ataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacac |
6517309 |
T |
|
| Q |
116 |
aactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatggg |
215 |
Q |
| |
|
||| |||||||||| ||||| |||||||||| |||||||| ||||| | |||||||||||||| |||| |||||||||||||||| || |||| | | |
|
|
| T |
6517308 |
aacgttgtcaaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctctatgacactag |
6517209 |
T |
|
| Q |
216 |
acctgcc-atgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatat |
314 |
Q |
| |
|
|||| |||| ||||||| |||| ||| || | ||| |||| ||||||||||||||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
6517208 |
accttattatgaa-gcatggagtttgaagacggcgataaatgaag------atgaatttgataaagtgcggaaaaatttgttggataatttaagaaatag |
6517116 |
T |
|
| Q |
315 |
agctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct |
414 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||| | ||||||||||||| |
|
|
| T |
6517115 |
agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacct |
6517016 |
T |
|
| Q |
415 |
gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttctta |
514 |
Q |
| |
|
||||||| | ||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || ||| ||| |||| || ||| |
|
|
| T |
6517015 |
gatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatg------agtgctagagttgtta |
6516922 |
T |
|
| Q |
515 |
gacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
581 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
6516921 |
gacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 47778041 - 47778150
Alignment:
| Q |
112 |
acacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaa |
211 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||| | ||||||||| |
|
|
| T |
47778041 |
acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa |
47778140 |
T |
|
| Q |
212 |
tgggacctgc |
221 |
Q |
| |
|
| |||||||| |
|
|
| T |
47778141 |
ttggacctgc |
47778150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
625 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
679 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 6523725 - 6523810
Alignment:
| Q |
112 |
acacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
197 |
Q |
| |
|
||||| ||||||| ||| | ||||||||||||||| ||||| || |||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
6523725 |
acacagctttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt |
6523810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 47760306 - 47760133
Alignment:
| Q |
18 |
aaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaa |
117 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||||||||||||| |||||||| | ||| | | ||| ||| | |||||| | ||||| ||| || |
|
|
| T |
47760306 |
aaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaa |
47760207 |
T |
|
| Q |
118 |
ctttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
197 |
Q |
| |
|
||||||| ||| | ||||||||||||||| |||| |||| || ||||||||||||| |||| |||| |||||||| |
|
|
| T |
47760206 |
ctttgtccaaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt |
47760133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 47781969 - 47782034
Alignment:
| Q |
132 |
aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||| ||||| |
|
|
| T |
47781969 |
aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatatt |
47782034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 47788183 - 47788272
Alignment:
| Q |
132 |
aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| ||||||||||| | ||| | || ||||| |||||||| |
|
|
| T |
47788183 |
aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc |
47788272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 47713391 - 47713336
Alignment:
| Q |
18 |
aaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
47713391 |
aaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
47713336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 47745974 - 47745921
Alignment:
| Q |
18 |
aaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccga |
71 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
47745974 |
aaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccga |
47745921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
381 |
tcaaaccatatttgctcttgttcaatgcacacctgatttgtc |
422 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 722161 - 722305
Alignment:
| Q |
28 |
aaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaa |
127 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| || | | |||||||||||| ||||| | || |||||| || |||||||||||||| || ||| |
|
|
| T |
722161 |
aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa |
722259 |
T |
|
| Q |
128 |
atcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgtt |
173 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
722260 |
accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt |
722305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 704393 - 704425
Alignment:
| Q |
16 |
ataaacaccgacaaagtaaacgctattggactg |
48 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
704393 |
ataaacactgacaaagtaaacgctattggactg |
704425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University