View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12784_high_7 (Length: 311)

Name: NF12784_high_7
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12784_high_7
NF12784_high_7
[»] chr5 (14 HSPs)
chr5 (1-294)||(14961790-14962083)
chr5 (91-164)||(13604858-13604931)
chr5 (76-164)||(2568646-2568734)
chr5 (100-164)||(37588378-37588442)
chr5 (130-164)||(37948499-37948533)
chr5 (134-164)||(39257439-39257469)
chr5 (127-164)||(35960401-35960438)
chr5 (180-232)||(41819519-41819572)
chr5 (91-152)||(41957460-41957521)
chr5 (100-152)||(14182399-14182450)
chr5 (100-164)||(15309011-15309075)
chr5 (100-164)||(21768215-21768279)
chr5 (180-232)||(29588788-29588840)
chr5 (132-164)||(37526249-37526281)
[»] chr6 (12 HSPs)
chr6 (91-176)||(4006689-4006775)
chr6 (174-232)||(3737977-3738035)
chr6 (17-84)||(2455891-2455958)
chr6 (122-164)||(2117391-2117433)
chr6 (135-168)||(2112184-2112217)
chr6 (100-164)||(8035166-8035230)
chr6 (129-164)||(5623144-5623179)
chr6 (77-164)||(21024199-21024286)
chr6 (124-161)||(316853-316890)
chr6 (100-163)||(30523649-30523711)
chr6 (180-232)||(31668795-31668847)
chr6 (100-164)||(32386581-32386645)
[»] chr3 (11 HSPs)
chr3 (14-164)||(45590652-45590802)
chr3 (100-164)||(14548739-14548803)
chr3 (100-164)||(22214677-22214741)
chr3 (125-164)||(2318632-2318671)
chr3 (129-160)||(51510240-51510271)
chr3 (14-64)||(38684485-38684535)
chr3 (91-152)||(1217809-1217870)
chr3 (127-164)||(20874349-20874386)
chr3 (131-164)||(49845565-49845598)
chr3 (124-164)||(32109352-32109392)
chr3 (100-152)||(39602228-39602280)
[»] chr1 (14 HSPs)
chr1 (100-176)||(7218092-7218169)
chr1 (14-82)||(23373232-23373300)
chr1 (77-159)||(7136993-7137075)
chr1 (100-164)||(4215360-4215424)
chr1 (100-164)||(15361701-15361765)
chr1 (100-163)||(25479570-25479633)
chr1 (113-164)||(33527178-33527229)
chr1 (122-164)||(25005837-25005879)
chr1 (13-83)||(27807197-27807267)
chr1 (14-44)||(49517190-49517220)
chr1 (14-83)||(37241740-37241808)
chr1 (107-164)||(37241847-37241904)
chr1 (18-82)||(5756605-5756669)
chr1 (129-176)||(25006081-25006129)
[»] chr2 (15 HSPs)
chr2 (101-152)||(9477952-9478003)
chr2 (107-160)||(29510584-29510637)
chr2 (76-163)||(6993718-6993805)
chr2 (180-234)||(11393765-11393819)
chr2 (180-234)||(11410426-11410480)
chr2 (122-164)||(37276734-37276776)
chr2 (122-164)||(39983330-39983372)
chr2 (136-176)||(3235438-3235478)
chr2 (136-164)||(4550765-4550793)
chr2 (129-176)||(11513873-11513921)
chr2 (100-164)||(13630299-13630363)
chr2 (100-164)||(13869113-13869177)
chr2 (101-161)||(16503343-16503403)
chr2 (100-164)||(40158706-40158770)
chr2 (180-232)||(42974260-42974312)
[»] chr7 (10 HSPs)
chr7 (90-159)||(2825239-2825308)
chr7 (127-164)||(25558236-25558273)
chr7 (127-164)||(25558434-25558471)
chr7 (14-82)||(30751602-30751670)
chr7 (134-164)||(9527142-9527172)
chr7 (130-164)||(25507337-25507371)
chr7 (101-163)||(33709437-33709499)
chr7 (91-152)||(24363610-24363671)
chr7 (14-83)||(43854960-43855029)
chr7 (90-150)||(17944351-17944411)
[»] chr4 (9 HSPs)
chr4 (14-163)||(35405936-35406085)
chr4 (122-160)||(42866060-42866098)
chr4 (13-54)||(1133039-1133080)
chr4 (90-159)||(7694018-7694087)
chr4 (91-164)||(8468936-8469009)
chr4 (100-176)||(10192259-10192335)
chr4 (100-153)||(55414438-55414491)
chr4 (136-164)||(44019513-44019541)
chr4 (132-164)||(53943594-53943626)
[»] chr8 (7 HSPs)
chr8 (100-159)||(31862486-31862545)
chr8 (122-164)||(29973069-29973111)
chr8 (134-164)||(43704430-43704460)
chr8 (127-164)||(12132821-12132858)
chr8 (100-165)||(31705072-31705137)
chr8 (100-164)||(7714230-7714294)
chr8 (131-159)||(30040595-30040623)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-176)||(27551-27593)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 14962083 - 14961790
Alignment:
Q  1 ttcatcttgtacgtgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatggcataatcatatgttat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  14962083 ttcatcttgtacgtgtttgaattaacttatttaaacttatctaccgacacaagcatttgagagactgtttcggagagcttatggcatgatcatatgttat 14961984  T
Q  101 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaacaatatgactttttatatagaaatagctcatacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14961983 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaacaatatgactttttatatagaaatagctcatacata 14961884  T
Q  201 agcgctcataagataagtgtttatgctataagtgtcgcaaattatggtgcctaactcacactgagtgttggccgctaacaataaggcttaaagt 294  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14961883 agcgcttataaaataagtgtttatgctataagtgtcgcaaattatggggcctaactcacactgagtgttggccgctaacaataaggcttaaagt 14961790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 13604858 - 13604931
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||| ||||||||||| ||||||||  |||  | ||||||||||||||||| |||| |||||||||||||    
T  13604858 catacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaagtttatatgaaa 13604931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 2568734 - 2568646
Alignment:
Q  76 agcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||| |||| ||||| |||||||| | |||| |||||| |  |||| | |||| |||||||||||||||||||| ||||| ||||    
T  2568734 agcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaa 2568646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 37588378 - 37588442
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| || |||||  |||| || |||||||||||||||||||||||| ||||||||||    
T  37588378 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 37588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 37948533 - 37948499
Alignment:
Q  130 ataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||||||||||||||| |||||||||||    
T  37948533 ataacttatgaaaacaacttataatttatatgaaa 37948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 39257439 - 39257469
Alignment:
Q  134 cttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  39257439 cttatgaaaacaacttatagtttatatgaaa 39257469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 35960438 - 35960401
Alignment:
Q  127 aggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  35960438 aggatagcttatgaaatcaacttatagtttatatgaaa 35960401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 41819572 - 41819519
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataa-gataagtgtttatgctataag 232  Q
    ||||||||||||| ||||| || ||||||| | |||||||||||||||||||||    
T  41819572 tatagaaatagcttatacaaaaccgctcatcatgataagtgtttatgctataag 41819519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 41957460 - 41957521
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    |||| ||| |||||| |||| ||||||||  ||||||||||| |||||||||||| ||||||    
T  41957460 cataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 14182399 - 14182450
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    ||||||||||| ||||||||  ||||| |||||||||||||||||| ||||||    
T  14182399 ttttcaacttattttcataagttctca-ggataacttatgaaaacagcttata 14182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 15309011 - 15309075
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| ||||||||  |||||| |||| || ||||||||||||||||| ||||| ||||    
T  15309011 ttttcatcttattttcataagatctcaatgatagctaatgaaaacaacttatagcttataagaaa 15309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 21768215 - 21768279
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||| |||| |||  |||  | ||||||||||||||||| |||| |||||||||||||    
T  21768215 ttttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaaa 21768279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 29588840 - 29588788
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataagataagtgtttatgctataag 232  Q
    ||||||||||||| |||||||||| || |||  | ||||||||||||||||||    
T  29588840 tatagaaatagcttatacataagcacttatataaaaagtgtttatgctataag 29588788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 37526249 - 37526281
Alignment:
Q  132 aacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||| ||||||||||    
T  37526249 aacttatgaaaacaacttatagcttatatgaaa 37526281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 4006775 - 4006689
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatat-gaaacaatatgacttt 176  Q
    |||| |||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||  ||||||| |||||||    
T  4006775 cataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgacttt 4006689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 3738035 - 3737977
Alignment:
Q  174 tttttatatagaaatagctcatacataagcgctcataagataagtgtttatgctataag 232  Q
    |||| |||||||||||||| |||||||||| |||||| |||||||||||| ||||||||    
T  3738035 ttttgatatagaaatagcttatacataagcactcatacgataagtgtttacgctataag 3737977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 2455958 - 2455891
Alignment:
Q  17 ttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatgg 84  Q
    |||||||||||||||| | ||||||||||| || ||||| ||| |||||||||| | |||||||||||    
T  2455958 ttgaattgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatgg 2455891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 2117433 - 2117391
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  2117433 tctctaggataacttatgaaaacaacttatagattatatgaaa 2117391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 2112217 - 2112184
Alignment:
Q  135 ttatgaaaacaacttatagtttatatgaaacaat 168  Q
    ||||||||||||||||||||||||||||||||||    
T  2112217 ttatgaaaacaacttatagtttatatgaaacaat 2112184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 8035166 - 8035230
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||| |||| |||  | || ||||||||||||||||||||||| ||| ||||||||||    
T  8035166 ttttcaacttattttcgtaagctttctaggataacttatgaaaacaacttctagcttatatgaaa 8035230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 5623179 - 5623144
Alignment:
Q  129 gataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| |||||||||||||||||||||||||||||||    
T  5623179 gatagcttatgaaaacaacttatagtttatatgaaa 5623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 21024286 - 21024199
Alignment:
Q  77 gcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||||  |||| ||||||   |||||||| | ||||| | ||||||||||    
T  21024286 gcttatgacatattcatatgttgttttcaacttattttcataagttctcgaggatagtatatgaaaatagcttattgcttatatgaaa 21024199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 316853 - 316890
Alignment:
Q  124 tcaaggataacttatgaaaacaacttatagtttatatg 161  Q
    |||||||||||||||||||||||||||||  |||||||    
T  316853 tcaaggataacttatgaaaacaacttatatcttatatg 316890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 30523711 - 30523649
Alignment:
Q  100 ttttcaacttaatttc-ataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 163  Q
    ||||||||| |||||| ||||| ||||||||||| |||||||||| ||||||||| |||||||||    
T  30523711 ttttcaact-aatttctataacctctcaaggatagcttatgaaaa-aacttatagcttatatgaa 30523649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 31668795 - 31668847
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataagataagtgtttatgctataag 232  Q
    ||||||||||||| |||||||||| || ||| ||||| || ||||||||||||    
T  31668795 tatagaaatagcttatacataagcacttatatgataattgcttatgctataag 31668847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 32386581 - 32386645
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| ||||||||  |||| ||||||||| ||||||||||| ||||  ||||||||||    
T  32386581 ttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaa 32386645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 45590802 - 45590652
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatggcataatcatatgttattttcaacttaatt 113  Q
    ||||||||||||||| ||| |||||||||||   || ||||| ||| |||| ||||| ||||||||||||  |    |||| ||||||||||||||| ||    
T  45590802 tgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatgataagtccataagttattttcaacttattt 45590703  T
Q  114 tcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
     ||| |  | ||  |||||||||||||||||||||||||  ||||||||||    
T  45590702 ccatgatttgtcctggataacttatgaaaacaacttatatcttatatgaaa 45590652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 14548739 - 14548803
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| || |||||  |||| || |||||||||||||||||||||||| ||||||||||    
T  14548739 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 14548803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 22214677 - 22214741
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| || | ||| ||||| |||||| |||||||||||||||||||| ||||||||||    
T  22214677 ttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaacttataggttatatgaaa 22214741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 2318671 - 2318632
Alignment:
Q  125 caaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  2318671 caagaataacttataaaaacaacttatagtttatatgaaa 2318632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 51510240 - 51510271
Alignment:
Q  129 gataacttatgaaaacaacttatagtttatat 160  Q
    ||||||||||||||||||||||||||||||||    
T  51510240 gataacttatgaaaacaacttatagtttatat 51510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 38684535 - 38684485
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagaga 64  Q
    ||||||||||| ||||||||||||||||||||| || || |||||| ||||    
T  38684535 tgtttgaattggcttatttaaacttatctaccggcataaacatttgtgaga 38684485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 1217809 - 1217870
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    |||| ||| |||||| |||| ||||||||  ||||||||||| |||||||||||| ||||||    
T  1217809 cataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 20874349 - 20874386
Alignment:
Q  127 aggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  20874349 aggatagcttatgaaaacagcttatagtttatatgaaa 20874386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 49845565 - 49845598
Alignment:
Q  131 taacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||||||||||||| ||||||||||||    
T  49845565 taacttatgaaaacaacttatggtttatatgaaa 49845598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 32109352 - 32109392
Alignment:
Q  124 tcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||| |||||||||||||||||||||| || |||||||    
T  32109352 tcaaggacaacttatgaaaacaacttatagcttgtatgaaa 32109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 39602228 - 39602280
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    ||||||||||| ||||||||  |||||| |||| |||||||||||| ||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 7218092 - 7218169
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatg-aaacaatatgacttt 176  Q
    ||||||||||| ||||||||  |||| ||||||  ||||||||||||||||||| ||||||| ||||||| |||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgacttt 7218169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 23373232 - 23373300
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 82  Q
    ||||||||||||||||||| ||||| ||||| || | ||||| ||| |||||||||| |||||||||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttat 23373300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 7136993 - 7137075
Alignment:
Q  77 gcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 159  Q
    ||||||| |||| ||||| |||||||||| |||| ||||||||  |||| | |||| |||||||||||| ||||||| |||||    
T  7136993 gcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattata 7137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 4215424 - 4215360
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| |||| || |||||  |||||||||||||||| |||||| ||| |||||||||||||||    
T  4215424 ttttcaccttatttgcataaactctcaaggataacttacgaaaacgactcatagtttatatgaaa 4215360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 15361765 - 15361701
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| ||||||| |||||  ||||||| ||| |||||||||||| ||||||| ||||||||||    
T  15361765 ttttcagcttaattccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaa 15361701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 25479633 - 25479570
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 163  Q
    |||||| |||| ||||||||  |||| |||||| ||||||||||||||||||||  ||||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 33527178 - 33527229
Alignment:
Q  113 ttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||  |||| ||||||||||||||||||| ||||||| ||||||||||    
T  33527178 ttcataagatctcgaggataacttatgaaaacagcttatagattatatgaaa 33527229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 25005837 - 25005879
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  25005837 tctccaggatagcttatgaaaacaacttatagcttatatgaaa 25005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 27807267 - 27807197
Alignment:
Q  13 gtgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 83  Q
    |||||| ||||||||||||| ||||| ||||| |||| |||||||||  ||| |||||  |||||||||||    
T  27807267 gtgtttaaattgacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatg 27807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 49517220 - 49517190
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctac 44  Q
    |||||||||||||||||||||||||||||||    
T  49517220 tgtttgaattgacttatttaaacttatctac 49517190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37241740 - 37241808
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 83  Q
    |||||| |||||||||||||| ||||||||| | || ||||| ||| |||||||||| ||||||| ||||    
T  37241740 tgtttggattgacttatttaagcttatctactg-cataagcacttgcgagattgtttaggagagcatatg 37241808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 37241847 - 37241904
Alignment:
Q  107 cttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||||||||  |||| |||||| |||||||||||||||| ||| ||||||||||    
T  37241847 cttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatgaaa 37241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 5756605 - 5756669
Alignment:
Q  18 tgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 82  Q
    ||||||||||||||||  ||||| ||||| || ||||| ||| |||  |||||||||||||||||    
T  5756605 tgaattgacttatttacgcttatttaccggcataagcacttgtgagcgtgtttcggagagcttat 5756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 25006081 - 25006129
Alignment:
Q  129 gataacttatgaaaacaacttatagtttatatg-aaacaatatgacttt 176  Q
    |||| |||||||||||||||||||| ||||||| ||||||| |||||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgacttt 25006129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 9478003 - 9477952
Alignment:
Q  101 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttata 9477952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 29510637 - 29510584
Alignment:
Q  107 cttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatat 160  Q
    |||||||||||||  |||||| |||| |||| ||||||||||||||||||||||    
T  29510637 cttaatttcataagctctcaaagatagcttaggaaaacaacttatagtttatat 29510584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 6993718 - 6993805
Alignment:
Q  76 agcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 163  Q
    ||||||||||||   |||| || ||||| | |||| ||||||||  ||||||| ||| |||||||||||||| ||||| |||||||||    
T  6993718 agcttatggcatgtccataagtcatttttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaa 6993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 11393765 - 11393819
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataagataagtgtttatgctataagtg 234  Q
    ||||||||||||| |||||||||| || | | ||||| |||||||||||||||||    
T  11393765 tatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtg 11393819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 11410426 - 11410480
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataagataagtgtttatgctataagtg 234  Q
    ||||||||||||| |||||||||| || | | ||||| |||||||||||||||||    
T  11410426 tatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtg 11410480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 37276776 - 37276734
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||||||||||||||||||||||||||  ||||||||||    
T  37276776 tctccaggataacttatgaaaacaacttataacttatatgaaa 37276734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 39983372 - 39983330
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  39983372 tctccaggatagcttatgaaaacaacttatagcttatatgaaa 39983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 3235438 - 3235478
Alignment:
Q  136 tatgaaaacaacttatagtttatatgaaacaatatgacttt 176  Q
    |||||||||| |||||||||||||||||||| | |||||||    
T  3235438 tatgaaaacagcttatagtttatatgaaacagtttgacttt 3235478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 4550793 - 4550765
Alignment:
Q  136 tatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||||||||    
T  4550793 tatgaaaacaacttatagtttatatgaaa 4550765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 11513921 - 11513873
Alignment:
Q  129 gataacttatgaaaacaacttatagtttatatg-aaacaatatgacttt 176  Q
    |||| |||||||||||||||||||| ||||||| ||||||| |||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgacttt 11513873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 13630299 - 13630363
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||| | ||||||  |||||||||||  ||| ||||||||||||| | ||||||||||    
T  13630299 ttttcaacttattgtcataaactctcaaggatagattaggaaaacaacttattgattatatgaaa 13630363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 13869113 - 13869177
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||| ||| |||||| |  |||| ||||||||||||||||||| ||||||| ||| ||||||    
T  13869113 ttttcaaattattttcattagttctccaggataacttatgaaaacagcttatagcttagatgaaa 13869177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 16503403 - 16503343
Alignment:
Q  101 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatg 161  Q
    ||||| |||| ||||||||| |||| | |||||||||||| || ||||||||| |||||||    
T  16503403 tttcagcttattttcataacctctccaagataacttatgagaagaacttatagcttatatg 16503343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 40158770 - 40158706
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||| ||||||| |||||  |||| || |||||||||||||||||||||| | ||||| ||||    
T  40158770 ttttcagcttaattacataagctctccagaataacttatgaaaacaacttattgcttatacgaaa 40158706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 42974312 - 42974260
Alignment:
Q  180 tatagaaatagctcatacataagcgctcataagataagtgtttatgctataag 232  Q
    ||||||||||| | ||||| |||| || ||| |||||||||||||||||||||    
T  42974312 tatagaaatagtttatacacaagcactaatatgataagtgtttatgctataag 42974260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 2825239 - 2825308
Alignment:
Q  90 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 159  Q
    ||||| |||||||||| |||| || |||||  |||| |||||| ||| ||||||||||||||||||||||    
T  2825239 tcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 25558236 - 25558273
Alignment:
Q  127 aggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25558236 aggataacttatgaaaacaacttatagcttatatgaaa 25558273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 25558434 - 25558471
Alignment:
Q  127 aggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25558434 aggataacttatgaaaacaacttatagcttatatgaaa 25558471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 30751670 - 30751602
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 82  Q
    |||||| ||| |||||||||||||||||||| |||| ||||| ||| | || ||||| |||||||||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttat 30751602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 9527142 - 9527172
Alignment:
Q  134 cttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  9527142 cttatgaaaacaacttatagtttatatgaaa 9527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 25507371 - 25507337
Alignment:
Q  130 ataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||| ||||||||||    
T  25507371 ataacttatgaaaacaacttatagcttatatgaaa 25507337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 33709499 - 33709437
Alignment:
Q  101 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 163  Q
    |||||||||| |||||| | ||||| || ||||||||||||||||  |||||| |||||||||    
T  33709499 tttcaacttattttcatcaagtctcgagaataacttatgaaaacagtttatagcttatatgaa 33709437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 24363610 - 24363671
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 152  Q
    |||| ||| |||||| |||| || |||||| |||| |||||| |||||||||||||||||||    
T  24363610 cataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 43854960 - 43855029
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 83  Q
    ||||||||||| ||||||| |||||||||||  ||| ||||||||| || | | ||| ||||||||||||    
T  43854960 tgtttgaattggcttatttgaacttatctactaacataagcatttgcgacactatttgggagagcttatg 43855029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 17944351 - 17944411
Alignment:
Q  90 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaactta 150  Q
    ||||||| | |||||| |||||||||||||  | || | ||||||||||||||||||||||    
T  17944351 tcatatgcttttttcagcttaatttcataaattatccaagataacttatgaaaacaactta 17944411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 35406085 - 35405936
Alignment:
Q  14 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatggcataatcatatgttattttcaacttaatt 113  Q
    ||||||||||| ||||||||||| |||||||   |||||  | ||| |||| ||||| |  ||||||| |  ||  ||||| | | |||||| |||| ||    
T  35406085 tgtttgaattggcttatttaaacctatctacaagcacaaatacttgtgagactgtttagttgagcttaagaaatgttcataagctgttttcagcttactt 35405986  T
Q  114 tcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 163  Q
     |||||  |||| |||||||||| |||||||||| |||||||||||||||    
T  35405985 ccataagctctccaggataacttttgaaaacaacctatagtttatatgaa 35405936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 42866098 - 42866060
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatat 160  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  42866098 tctcaaggatagcttatgaaaacaacttatagcttatat 42866060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 1133080 - 1133039
Alignment:
Q  13 gtgtttgaattgacttatttaaacttatctaccgacacaagc 54  Q
    |||||||||||||||||||| | ||||||||| |||||||||    
T  1133080 gtgtttgaattgacttatttgagcttatctactgacacaagc 1133039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 7694018 - 7694087
Alignment:
Q  90 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 159  Q
    ||||| ||| |||||| |||| || |||||  |||| ||||||||||||||||||| ||||||| |||||    
T  7694018 tcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttata 7694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 8469009 - 8468936
Alignment:
Q  91 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||| ||| ||||||  ||| ||||||||  |||| || ||||||||||||||||||| |||| ||||||||||    
T  8469009 cataagttgttttcagattattttcataagctctctagaataacttatgaaaacaactaatagcttatatgaaa 8468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 10192335 - 10192259
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatg-aaacaatatgacttt 176  Q
    ||||||||||| ||||||| | |||| |||||| ||| |||||||||||||||  ||||||| ||||||| |||||||    
T  10192335 ttttcaacttattttcatagc-tctccaggatagcttttgaaaacaacttataacttatatgaaaacaatttgacttt 10192259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 55414438 - 55414491
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatag 153  Q
    ||||||||||| ||||||||  |||| | |||||||||||||||||| ||||||    
T  55414438 ttttcaacttattttcataagttctccaagataacttatgaaaacaatttatag 55414491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 44019541 - 44019513
Alignment:
Q  136 tatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||||||||    
T  44019541 tatgaaaacaacttatagtttatatgaaa 44019513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 53943626 - 53943594
Alignment:
Q  132 aacttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||| ||||||||||||||||||||||||    
T  53943626 aacttatgtaaacaacttatagtttatatgaaa 53943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 31862545 - 31862486
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 159  Q
    |||||| |||| ||||||||  |||| ||||||||||||||||||| ||||||| |||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttata 31862486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 29973111 - 29973069
Alignment:
Q  122 tctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  29973111 tctcaaggatagcttatgaaaacaacttatagcttatgtgaaa 29973069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 43704430 - 43704460
Alignment:
Q  134 cttatgaaaacaacttatagtttatatgaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  43704430 cttatgaaaacaacttatagtttatatgaaa 43704460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 12132858 - 12132821
Alignment:
Q  127 aggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  12132858 aggataacttatgaaaacagcttatagcttatatgaaa 12132821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 31705137 - 31705072
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaac 165  Q
    |||||| |||| || |||||  ||||||||| | |||||||||||| ||||||| |||||||||||    
T  31705137 ttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaac 31705072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 7714294 - 7714230
Alignment:
Q  100 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaaa 164  Q
    ||||||||||| |||||| |  |||| | |||| || ||||||||||||||||||| ||||||||    
T  7714294 ttttcaacttattttcatgagctctccaagatagctcatgaaaacaacttatagttgatatgaaa 7714230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 30040595 - 30040623
Alignment:
Q  131 taacttatgaaaacaacttatagtttata 159  Q
    |||||||||||||||||||||||||||||    
T  30040595 taacttatgaaaacaacttatagtttata 30040623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 27593 - 27551
Alignment:
Q  135 ttatgaaaacaacttatagtttatatg-aaacaatatgacttt 176  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgacttt 27551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University