View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12784_high_9 (Length: 242)

Name: NF12784_high_9
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12784_high_9
NF12784_high_9
[»] chr1 (11 HSPs)
chr1 (18-223)||(25228775-25228980)
chr1 (20-223)||(25183834-25184037)
chr1 (57-178)||(26550866-26550987)
chr1 (50-178)||(26545425-26545553)
chr1 (81-131)||(25725192-25725242)
chr1 (81-131)||(25733600-25733650)
chr1 (82-177)||(25159686-25159781)
chr1 (83-177)||(25163693-25163787)
chr1 (86-175)||(25794115-25794204)
chr1 (81-131)||(25728569-25728619)
chr1 (101-147)||(25790438-25790484)
[»] chr2 (1 HSPs)
chr2 (66-132)||(38407062-38407128)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 25228980 - 25228775
Alignment:
Q  18 atgaacagtagaattgtgtgttgccaataattttatctcgaaatgtaaaaccataagtatcatcatgatgaagaagatgaactccaagatcatcatctgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25228980 atgaacagtagaattgtgtgttgccaataattttatctcgaaatgtaaaaccataagtatcaccatgatgaagaagatgaactccaagatcatcatctgc 25228881  T
Q  118 agatttgcaatgaacagttaaatccagattattatccaaattgttaataatattcacatggtgcgttccaaatccaataacattgtgcatcaatagcaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25228880 agatttgcaatgaacagttaaatccagattattatccaaattgttaataagattcacatggtgcgttccaaatccaataacattgtgcatcaatagcaat 25228781  T
Q  218 gccaac 223  Q
    ||||||    
T  25228780 gccaac 25228775  T

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Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 25184037 - 25183834
Alignment:
Q  20 gaacagtagaattgtgtgttgccaataattttatctcgaaatgtaaaaccataagtatcatcatgatgaagaagatgaactccaagatcatcatctgcag 119  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||    
T  25184037 gaacagtagaattgtgtgtttccaataattctatctcgaaatttaaaaccataagtatcaccatgatgaagaagatgaactccaagatcatcatctttag 25183938  T
Q  120 atttgcaatgaacagttaaatccagattattatccaaattgttaataatattcacatggtgcgttccaaatccaataacattgtgcatcaatagcaatgc 219  Q
    |||||||||||| |||||| ||||||||||| ||||||| |||| ||| | |||||||||| ||||||||||||||||||||||| | |||||||||||     
T  25183937 atttgcaatgaatagttaagtccagattattgtccaaatcgttagtaagaatcacatggtgggttccaaatccaataacattgtgtaacaatagcaatgt 25183838  T
Q  220 caac 223  Q
    ||||    
T  25183837 caac 25183834  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 26550987 - 26550866
Alignment:
Q  57 gaaatgtaaaaccataagtatcatcatgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattattatccaa 156  Q
    ||||| |||| |||||| ||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||| |||| |||||  |||||    
T  26550987 gaaatttaaagccataactatcaccatgatgaagaagatgagatccaagatcatcatctgcagacttgcaatgaacggttaagtccaaattatcttccaa 26550888  T
Q  157 attgttaataatattcacatgg 178  Q
    |  ||||| ||| |||||||||    
T  26550887 agagttaagaatgttcacatgg 26550866  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 26545553 - 26545425
Alignment:
Q  50 ttatctcgaaatgtaaaaccataagtatcatcatgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattat 149  Q
    |||||| ||||| |||| |||||| ||||| |||||||||||||||||  |||||||||||||||| |||| ||||||||||| ||||| |||| |||||    
T  26545553 ttatctagaaatttaaagccataactatcaccatgatgaagaagatgagatccaagatcatcatctccagacttgcaatgaacggttaagtccaaattat 26545454  T
Q  150 tatccaaattgttaataatattcacatgg 178  Q
      ||||||  ||||| ||| |||||||||    
T  26545453 cttccaaagagttaagaatgttcacatgg 26545425  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 25725192 - 25725242
Alignment:
Q  81 catgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725192 catgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaa 25725242  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 25733600 - 25733650
Alignment:
Q  81 catgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25733600 catgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaa 25733650  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 25159686 - 25159781
Alignment:
Q  82 atgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattattatccaaattgttaataatattcacatg 177  Q
    ||||||||||||||| | |||||  |||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||  |||| |||||||    
T  25159686 atgatgaagaagatgtattccaatgtcatcatctgcagatttgcaatgaacagttaagtccaaatttttagctaaattgttaccaatagtcacatg 25159781  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 25163693 - 25163787
Alignment:
Q  83 tgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattattatccaaattgttaataatattcacatg 177  Q
    |||||||||||||| | |||||  |||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||  |||| |||||||    
T  25163693 tgatgaagaagatgtattccaatgtcatcatctgcagatttgcaatgaacagttaagtccaaattatcagctaaattgttaccaatagtcacatg 25163787  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 25794204 - 25794115
Alignment:
Q  86 tgaagaagatgaactccaagatcatcatctgcagatttgcaatgaacagttaaatccagattattatccaaattgttaataatattcaca 175  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||||  |||||||||| ||||   |||||||||||  ||| |||||||    
T  25794204 tgaagaagttgagctccaagatcattatctgcagatttgcaatgaagggttaaatccaaattaccttccaaattgtttttaacattcaca 25794115  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 25728569 - 25728619
Alignment:
Q  81 catgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaa 131  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  25728569 catgatgaagaaggtgaactccaagatcatcatctttagatttgcaatgaa 25728619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 25790484 - 25790438
Alignment:
Q  101 ccaagatcatcatctgcagatttgcaatgaacagttaaatccagatt 147  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||    
T  25790484 ccaagatcatcatctgcagatttgcaatgaagagttaagtctagatt 25790438  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 38407128 - 38407062
Alignment:
Q  66 aaccataagtatcatcatgatgaagaagatgaactccaagatcatcatctgcagatttgcaatgaac 132  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  38407128 aaccataaatatcaccattatgaagaaaatgaactccaagatcatcatctttagatttacaatgaac 38407062  T

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