View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12784_low_3 (Length: 409)
Name: NF12784_low_3
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12784_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 85 - 392
Target Start/End: Complemental strand, 3045854 - 3045540
Alignment:
| Q |
85 |
gtgttgatagaatctcttgttgcatagta------ataataataacagcaacaacaactaaccagtctcgtggcctcattgttgattatcatcgactgga |
178 |
Q |
| |
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||||| ||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3045854 |
gtgttcataaaatctcttgttgcatagtagtaataataataataataataacaacaactaaccagtctcgtggcctcgttgttgattatcatcgactgga |
3045755 |
T |
|
| Q |
179 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaactctt |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3045754 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcgttcaccctttctttgaactctt |
3045655 |
T |
|
| Q |
278 |
gaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttcttcttatcatcatg |
377 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3045654 |
gaactggaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttttataaactcatcatacttttccttcttcttatcatcatg |
3045555 |
T |
|
| Q |
378 |
aaacaaagctttttt |
392 |
Q |
| |
|
||||||||||||||| |
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| T |
3045554 |
aaacaaagctttttt |
3045540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 359
Target Start/End: Original strand, 33468633 - 33468839
Alignment:
| Q |
157 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
256 |
Q |
| |
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||||| || ||||| || |||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| |
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| T |
33468633 |
ttgttcatcatcattgattggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctta |
33468732 |
T |
|
| Q |
257 |
ttcacccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcat |
352 |
Q |
| |
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|||| ||||| |||||| | || |||||||||| |||| |||||| ||| | ||| |||||||| ||| ||| |||||||||||||||||| |||| |
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| T |
33468733 |
ttcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcat |
33468832 |
T |
|
| Q |
353 |
acttttc |
359 |
Q |
| |
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||||||| |
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| T |
33468833 |
acttttc |
33468839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 365
Target Start/End: Complemental strand, 34604149 - 34603960
Alignment:
| Q |
177 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
275 |
Q |
| |
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||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34604149 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34604050 |
T |
|
| Q |
276 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
365 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
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| T |
34604049 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34603960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 365
Target Start/End: Complemental strand, 34725426 - 34725237
Alignment:
| Q |
177 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
275 |
Q |
| |
|
||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
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| T |
34725426 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34725327 |
T |
|
| Q |
276 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
365 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
34725326 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34725237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3046207 - 3046139
Alignment:
| Q |
1 |
tcttctatgtaagggggttggatggagcatcaacatacgtgaagtacaataatcataataataactggcggaa |
73 |
Q |
| |
|
|||||||||||| ||||||||| | |||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
3046207 |
tcttctatgtaatggggttgga----gtatcagcatatgtcaagtacaataatcataataataactggcggaa |
3046139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 392
Target Start/End: Original strand, 30865192 - 30865425
Alignment:
| Q |
160 |
ttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttc |
259 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||| || ||||| ||||| || ||| |
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|
| T |
30865192 |
ttgatgatcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattc |
30865291 |
T |
|
| Q |
260 |
acccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatact |
355 |
Q |
| |
|
||| ||| || ||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
30865292 |
accttttgttagaattcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatact |
30865391 |
T |
|
| Q |
356 |
tttccttcttcttatcatcatgaaacaaagctttttt |
392 |
Q |
| |
|
|| | |||||||||||||||||| | ||||||| |
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| T |
30865392 |
ttcc---actcttatcatcatgaaacacaactttttt |
30865425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 175 - 353
Target Start/End: Original strand, 38868786 - 38868965
Alignment:
| Q |
175 |
tggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaac |
273 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |||||| |
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| T |
38868786 |
tggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacctcattcaccatttgtttgaat |
38868885 |
T |
|
| Q |
274 |
tcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
353 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||| |
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|
| T |
38868886 |
tcttgaactggaagtctgactcgatgatgatcattcatgcatctcttgaaatcatctatgtcttttacaaacttatcata |
38868965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 39046822 - 39046734
Alignment:
| Q |
166 |
atcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacct |
254 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||| ||||||||| |||||||| |
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|
| T |
39046822 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctagaagtacct |
39046734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 353
Target Start/End: Original strand, 1206334 - 1206524
Alignment:
| Q |
157 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
256 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||| ||||| |||||||| |||||||||||| |
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|
| T |
1206334 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatgcc-tttaagtacctca |
1206426 |
T |
|
| Q |
257 |
ttcacccttt-tttgaactcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
353 |
Q |
| |
|
||| |||||| |||||| ||||||||| ||| || ||| |||| || |||||||||||||||||||||| ||||||||| | ||| |||||||| |
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|
| T |
1206427 |
ttcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcacaaattcatcata |
1206524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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