View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12784_low_4 (Length: 391)
Name: NF12784_low_4
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12784_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 41548140 - 41548505
Alignment:
| Q |
19 |
actttcttgtttcaacttattatgagttttttcagccgtcttggcttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatt |
118 |
Q |
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| T |
41548140 |
actttcttgtttcaacttattatgagttttttcagccgtcttggcttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatt |
41548239 |
T |
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| Q |
119 |
tcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagttgttgtctttccatttcaacattcttatgtaagtgttgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548240 |
tcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagttgttgtctttccatttcaacattcttatgtaagtgttgaa |
41548339 |
T |
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| Q |
219 |
tctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactctttcataagtttccatctgtaaagatccaagcaatacttgaacaagatctgg |
318 |
Q |
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| T |
41548340 |
tctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactctttcataagtttccatctgtaaagatccaagcaatacttgaacaagatctgg |
41548439 |
T |
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| Q |
319 |
gatagtcattccttctaagtcaagagttgtcataggaaatgctccaacttcatcatcttcatctct |
384 |
Q |
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| T |
41548440 |
gatagtcattccttctaagtcaagagttgtcataggaaatgctccaacttcatcatcttcgtctct |
41548505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 41509652 - 41509743
Alignment:
| Q |
82 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt |
173 |
Q |
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| T |
41509652 |
ataacgttcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctccattt |
41509743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 41519878 - 41519969
Alignment:
| Q |
82 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt |
173 |
Q |
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| T |
41519878 |
ataacgttcttgtactttcttccctttctgacaaagttcctctcttttcttaaactcttcctcggcctgtatccttgcaagtttctccattt |
41519969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 41515637 - 41515732
Alignment:
| Q |
82 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
177 |
Q |
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| T |
41515637 |
ataactttcttgaactttcttccctttctcacaaatctcttctcttttcttaaactcagactcagcgtacaaccttgagagtttctccagttgaag |
41515732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 41524548 - 41524655
Alignment:
| Q |
63 |
cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagag |
162 |
Q |
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|||| ||||| ||||| | |||||||||||| ||||||||| ||| | |||||| || ||||||||||| ||||| |||||| | |||||||||||| |
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| T |
41524548 |
cttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagag |
41524647 |
T |
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| Q |
163 |
tttctcca |
170 |
Q |
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|||||||| |
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| T |
41524648 |
tttctcca |
41524655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 41469895 - 41469970
Alignment:
| Q |
63 |
cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactc |
138 |
Q |
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| T |
41469895 |
cttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactc |
41469970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 41509765 - 41509849
Alignment:
| Q |
183 |
gtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactct |
267 |
Q |
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| T |
41509765 |
gtctctccatatcaacattctgctgcaagcgttgagtttggtctctgagtccaacatctctactcaccaaaacaccttcaactct |
41509849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 16638393 - 16638334
Alignment:
| Q |
118 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
177 |
Q |
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| T |
16638393 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
16638334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 17457245 - 17457304
Alignment:
| Q |
118 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
177 |
Q |
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| T |
17457245 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
17457304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 17595969 - 17595910
Alignment:
| Q |
118 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
177 |
Q |
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||||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||| |
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| T |
17595969 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
17595910 |
T |
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