View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12784_low_6 (Length: 324)
Name: NF12784_low_6
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12784_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 42306400 - 42306079
Alignment:
| Q |
1 |
gtggcgagatgtaagtgtatatgtccttttgaaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctcnnnnnnnttacg----tttct |
96 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
42306400 |
gtggcaagatgtaagtgtatatgtccttttgaaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctcaaaaaaattacgactatttct |
42306301 |
T |
|
| Q |
97 |
catcctttccccattaaataaggtattatatcggaagcacgttttcagtggtgtatttcatctgaaaatataccgtcgtacaaatttgagcatataaggg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306300 |
catcctttccccattaaataaggtattatatcggaagcacgttttcagtggtgtatttcatctgaaaatataccgtcgtacaaatttgagcatataaggg |
42306201 |
T |
|
| Q |
197 |
gtgcgattagcaatcattaacaaaggatgggccgttttccttttctattgaagcccaaacccgtttcggatccatagatttaaaccctaatctcttgcct |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306200 |
gtgcgattagcaatcattaacaaaggatgggccgttttccttttctattgaagcccaaacccgtttcggatccatagatttaaaccctaatctcttgcct |
42306101 |
T |
|
| Q |
297 |
caaactcttcgtttcttctctc |
318 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42306100 |
caaactcttcgtttcttctctc |
42306079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 42306472 - 42306425
Alignment:
| Q |
32 |
aaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctc |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42306472 |
aaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctc |
42306425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 336687 - 336885
Alignment:
| Q |
1 |
gtggcgagatgtaagtgtatatgtccttttgaaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctcnnnnnnnttacg----tttct |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
336687 |
gtggcgagatgtaagtgtatatgtccttttgaaatagcaattttctccctcaaattaaataatcccaatcaaaatgctcaaaaaaattacgactatttct |
336786 |
T |
|
| Q |
97 |
catcctttccccattaaataaggtattatatcggaagcacgttttcagtggtgtatttcatctgaaaatataccgtcgtacaaatttgagcatataagg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
336787 |
catcctttccccattaaataaggtattatatcggaagcacgttttcagtggtgtatttcatctgaaaatattccatcgtacaaatttgagcatataagg |
336885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 339186 - 339314
Alignment:
| Q |
190 |
ataaggggtgcgattagcaatcattaacaaaggatgggccgttttccttttctattgaagcccaaacccgtttcggatccatagatttaaaccctaatct |
289 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
339186 |
ataaggggtgcgattagcaatcatgaacaaaggatgggccgttttccttttctattgaagcttaaacccgtttcggatccatagatttaaaccctaatct |
339285 |
T |
|
| Q |
290 |
cttgcctcaaactcttcgtttcttctctc |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
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| T |
339286 |
cttgcctcaaacccttcgtttcttctctc |
339314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 336615 - 336662
Alignment:
| Q |
32 |
aaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctc |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
336615 |
aaatagcaaatttctccctcaaattaaataatcccaatcaaaatgctc |
336662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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