View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12784_low_9 (Length: 263)
Name: NF12784_low_9
Description: NF12784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12784_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 292293 - 292065
Alignment:
| Q |
19 |
agacagttcatcagtaaattcataattcaaacagcccacactattcagtcaaattgaaccctatctttggttcaacacacaatgctttacattttcaaaa |
118 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
292293 |
agacagttcatcggtaaattcataattcaaacagctcacactattcagtcaaattgaaccctatctttggttcaacgcacaatgctttacattttcaaaa |
292194 |
T |
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| Q |
119 |
ctaactgatacgttcagtcaaaagacttgaagcaaactaaattcagggttgaacttctggtctcccagtgccgaacttcaagaatc-ttcaagcatatga |
217 |
Q |
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| T |
292193 |
ctaaccgatacgttcagtcaaaagactcaaggcaaactaaattcagggttgaacttctggtttcccagtgccgaacttcaagaatcatttaagcatatga |
292094 |
T |
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| Q |
218 |
taacaaaataatttcagaataaatttcca |
246 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
292093 |
taacaaaataattacagaataaatttcca |
292065 |
T |
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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 45961565 - 45961750
Alignment:
| Q |
19 |
agacagttcatcagtaaattcataattcaaacagcccacactattcagtcaaattgaaccctatctttggttcaacacacaatgctttacattttcaaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
45961565 |
agacagttcatcagtaaattcataattcaaacagcccacactattcagtcaaattgacccctatctttggttcaacgcacaatgctatacattttcaaaa |
45961664 |
T |
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| Q |
119 |
ctaactgatacgttcagtcaaaagacttgaagcaaactaaattcagggttgaacttctggtctcccagtgccgaacttcaagaatc |
204 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||| || |||||||||||||||||||||||| |
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| T |
45961665 |
ctaactgatacgttcagtcaaaagactcgaagaaaactaaattcagcgctgaacttctagtttcccagtgccgaacttcaagaatc |
45961750 |
T |
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