View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12785_low_4 (Length: 302)
Name: NF12785_low_4
Description: NF12785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12785_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 40519847 - 40519571
Alignment:
| Q |
18 |
gttttgacattgtttgttgatttaggcagcgtggacaatggaacaactatttaatagtatatgtgaaacaagagagtattacatttcgagccaaatcatt |
117 |
Q |
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| T |
40519847 |
gttttgacattgtttgttgatttaggcagcgtggacaatggaacaactatttaatagtatatgtgaaacaagagagtattacattttgagccaaatcatt |
40519748 |
T |
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| Q |
118 |
cattcccaatttctccattggtgataattgactcaaaattgcaggttgaagattcggcaaaaatcgtggtacgatttggagaaatcaagacacgattttg |
217 |
Q |
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| T |
40519747 |
cattcccaatttctccattattgagaatttactcaaaattacaggttgaagattcggcaaaaatcgtggtacgattttgagaaatcgagacacgatttta |
40519648 |
T |
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| Q |
218 |
tgcatgttttgaaagttttggttcgacaaaaattgggacacaaattttagataatgtccatatagtacagtgaacga |
294 |
Q |
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| T |
40519647 |
tgcatgttttgaaaattttggttcgacaaaaattgggatacgatttttagataatgttcatataatatagtgtacga |
40519571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 21157014 - 21156943
Alignment:
| Q |
143 |
aattgactcaaaattgcaggttgaagattcggcaaaaatcgtggtacgatttggagaaatcaagacacgattt |
215 |
Q |
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| T |
21157014 |
aattgactcaaaattg-atgttgaagcttcgtcaaaaatcgtggtatgatttggtgagatcatgacatgattt |
21156943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2315234 - 2315179
Alignment:
| Q |
192 |
tttggagaaatcaagacacgattttgtgcatgttttgaaagttttggttcgacaaa |
247 |
Q |
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| T |
2315234 |
tttggagaaatcatgacatgattttgtgcatgttttgaaagctttggttcgacaaa |
2315179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 29797339 - 29797295
Alignment:
| Q |
206 |
gacacgattttgtgcatgttttgaaagttttggttcgacaaaaat |
250 |
Q |
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| T |
29797339 |
gacacgattttgcgcatgttttgaaagttttggtttgacaaaaat |
29797295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 29796848 - 29796769
Alignment:
| Q |
143 |
aattgactcaaaattgcaggttgaagattcggcaaaaatcgtggtacgatttggagaaatcaagacacgattttgtgcat |
222 |
Q |
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| T |
29796848 |
aattgtctcaaaattgatgattgaagattcggcaaaaatcgtgacatgattttgagaaatcggggcacgattttatgcat |
29796769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 5611727 - 5611656
Alignment:
| Q |
143 |
aattgactcaaaattgcaggttgaagattcggcaaaaatcgtggtacgatttggagaaatcaagacacgattt |
215 |
Q |
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| T |
5611727 |
aattgactcaaaattg-atgttgaagcttcgtcaaaaatcgtggtatgatttggtgagatcatgacatgattt |
5611656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 5700675 - 5700570
Alignment:
| Q |
143 |
aattgactcaaaattgcaggttgaagattcggcaaaaatcgtggtacgatttggagaaatcaagacacgattttgtgcatgttttgaaagttttggttcg |
242 |
Q |
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|||||||||||||||| || || ||||| || |||||||||| ||||||| ||||||||| | || | ||||||||| |||||| |||||||||| | |
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| T |
5700675 |
aattgactcaaaattgaagaatg-agattaggtaaaaatcgtgatacgattaggagaaatcggggcagggttttgtgcaagttttg-gagttttggttgg |
5700578 |
T |
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| Q |
243 |
acaaaaat |
250 |
Q |
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|||||||| |
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| T |
5700577 |
acaaaaat |
5700570 |
T |
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