View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12786_high_1 (Length: 412)
Name: NF12786_high_1
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12786_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 52771718 - 52772099
Alignment:
| Q |
15 |
cactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaatgcc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771718 |
cactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaatgcc |
52771817 |
T |
|
| Q |
115 |
gacacctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771818 |
gacacctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatg |
52771917 |
T |
|
| Q |
215 |
agagttgccttctttcgtccataagcatcgttaatccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctgca |
314 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771918 |
agagttgccttctttcgtccgtaagcatcgttaatccaaccacctattgctgctccaactattgcaccagctattgccatgctgactattgtttcctgca |
52772017 |
T |
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| Q |
315 |
gaatgttactttctctaacggattcaaaatcatcttttatatatagaagagctcctgatatcacacctgcatgcatccatgt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52772018 |
gaatgttactttctctaacggattcaaaatcatcttttatatatagaagagctcctgatatcacacctgcatgcatccatgt |
52772099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 312
Target Start/End: Original strand, 52768909 - 52769076
Alignment:
| Q |
145 |
tatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccataagcatcg |
244 |
Q |
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||||||||| |||||||| ||||| |||||||| |||||||||| | ||| ||||| ||||| || |||| ||||||||||||| ||||||| ||| |
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| T |
52768909 |
tatgagaatataaggatctggcgcagcagccatgacaattgctccgagaataaagataacatctgcaatgatggttgccttctttcttccataacgatca |
52769008 |
T |
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| Q |
245 |
ttaatccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctg |
312 |
Q |
| |
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|| |||||||||||| |||||||||||| ||||||||||| | |||||||||||| ||||||||||| |
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| T |
52769009 |
ttcatccaaccacctactgctgctccaacaattgcaccagccactgccatgctgacaattgtttcctg |
52769076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 390329 - 390036
Alignment:
| Q |
19 |
ggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaatgccgaca |
118 |
Q |
| |
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||||||||||||| |||||| ||||||||||| ||||||||||| || |||| |||| ||||||||||| ||||| || ||||| || ||||| ||| |
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| T |
390329 |
ggtgatcatgaggacattagtgctgactaatgagcctctgatttcagagggtgcgacttctgcaatgtagacaggagcagtaacagaagctatgccaaca |
390230 |
T |
|
| Q |
119 |
cctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatgagag |
218 |
Q |
| |
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|| |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||||||| | ||| ||||| ||||| || | ||| | |
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| T |
390229 |
cccaaaccaacgagaagacgtcctgctatgagaacataaggatcaggtgcagcagccatgagaattgctccgagaataaagataacatcagctaagagtg |
390130 |
T |
|
| Q |
219 |
ttgccttctttcgtccataagcatcgttaatccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctg |
312 |
Q |
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| T |
390129 |
tggccttctttcttccataagcgtcattaagccaaccaccaaatgccgcaccaacaattgcaccagcaattgccatgctaacaattgtttcctg |
390036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 314
Target Start/End: Original strand, 38013775 - 38014039
Alignment:
| Q |
50 |
gaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaatgccgacacctaaaccaacaagaaggcgtccgattatga |
149 |
Q |
| |
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||||| || ||||| || ||||| | ||| ||||| || || ||||| ||||||||||| | || ||||| | ||||||||||| || || | ||||| |
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| T |
38013775 |
gaaccccttatttctgatggtgaggattctgcaatatatacaggagccgtgacagaggctacacccacaccaatgccaacaagaagacggccaagtatga |
38013874 |
T |
|
| Q |
150 |
gaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccataagcatcgttaat |
249 |
Q |
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||| || | ||| ||||||| ||||||| ||| || ||||| | | |||| ||||| || | || ||||||||||| |||||| ||||||| ||||| |
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| T |
38013875 |
gaacatatgcatctggcgcggaagccataacaactgatccaagagtaaagacaacatcagcactaagtgttgccttcttacgtccaaaagcatcattaat |
38013974 |
T |
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| Q |
250 |
ccaaccacctgttgctgctccaactattgcaccagctattgccatgctgactattgtttcctgca |
314 |
Q |
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||| ||||||||||||||||||| ||||||||| | | ||||||||| || || |||||||||| |
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| T |
38013975 |
ccagccacctgttgctgctccaataattgcaccaaccaatgccatgcttacaatagtttcctgca |
38014039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 38014144 - 38014192
Alignment:
| Q |
338 |
tcaaaatcatcttttatatatagaagagctcctgatatcacacctgcat |
386 |
Q |
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|||||||||||||| |||||||||||||| || || || |||||||||| |
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| T |
38014144 |
tcaaaatcatctttaatatatagaagagcaccagaaataacacctgcat |
38014192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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