View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12786_high_4 (Length: 296)

Name: NF12786_high_4
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12786_high_4
NF12786_high_4
[»] chr5 (1 HSPs)
chr5 (69-286)||(2619327-2619544)
[»] chr8 (2 HSPs)
chr8 (91-286)||(11092040-11092235)
chr8 (73-281)||(41319690-41319898)
[»] chr7 (1 HSPs)
chr7 (213-281)||(29613105-29613173)
[»] chr4 (1 HSPs)
chr4 (72-284)||(22776347-22776559)
[»] chr2 (2 HSPs)
chr2 (213-284)||(40945102-40945173)
chr2 (90-188)||(40944979-40945077)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 286
Target Start/End: Complemental strand, 2619544 - 2619327
Alignment:
Q  69 ccgtacctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtccaggatatcta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2619544 ccgtacctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtcctggatatcta 2619445  T
Q  169 tgaatacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2619444 tgaatacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatat 2619345  T
Q  269 tctgcaaatgactctctg 286  Q
    ||||||||||||||||||    
T  2619344 tctgcaaatgactctctg 2619327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 11092235 - 11092040
Alignment:
Q  91 tcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtccaggatatctatgaatacaacgatcctgcattt 190  Q
    ||||| |||||||||| |||||| ||||||||||||||||| || | ||||||||||||||| |  |||||||| || |||||||| | ||| |||||||    
T  11092235 tccttggtaagtggaataccaagctcagccatacaagcttgaatcctatcatcagaaccatacaaaccaggatacctttgaatacacctatcttgcattt 11092136  T
Q  191 tcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattctgcaaatgactctctg 286  Q
    || | | |||    ||||||  |||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  11092135 tctccaaagcaacagccaaaggataacttatagcaaatccaccaccaccataagccatattataagaaaaataaatattctgcaaatgactctctg 11092040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 41319690 - 41319898
Alignment:
Q  73 acctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtccaggatatctatgaa 172  Q
    ||||||||||| ||  |||| || || ||||||||||| ||||||||||||||||| ||||||| |||||| || ||||| | ||| ||||| |  ||||    
T  41319690 acctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggataccgttgaa 41319789  T
Q  173 tacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattctg 272  Q
    |||| ||||||||||||||    || ||||| ||||||  ||| || ||||||||||||||||||||||||||||||||||| |||||  | ||||||||    
T  41319790 tacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatattctg 41319889  T
Q  273 caaatgact 281  Q
    |||||||||    
T  41319890 caaatgact 41319898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 29613105 - 29613173
Alignment:
Q  213 ataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattctgcaaatgact 281  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||| || |||||    
T  29613105 ataactaatagcaaatccaccaccaccataagccatattataagaaaaattaatattctgaaagtgact 29613173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 284
Target Start/End: Original strand, 22776347 - 22776559
Alignment:
Q  72 tacctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtccaggatatctatga 171  Q
    |||||||||||| ||   |||||| || | ||||||||| || |||||||| ||||||||||||| |||||||   ||||| |   |||| || |  |||    
T  22776347 tacctggtgaaaccctgcttccttggttaatggaacacctagctcagccatgcaagcttgcattctatcatcactgccatacaaagcagggtaacgttga 22776446  T
Q  172 atacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattct 271  Q
    ||||||||||||||||| ||  | ||  | || ||||||   || || ||||||||||| |||||||||||||||||| |||| || |||| ||| ||||    
T  22776447 atacaacgatcctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcatacgagaaatgtatgttct 22776546  T
Q  272 gcaaatgactctc 284  Q
    | | |||||||||    
T  22776547 gaacatgactctc 22776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 40945102 - 40945173
Alignment:
Q  213 ataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatattctgcaaatgactctc 284  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||||  |||||||| | |||||||||    
T  40945102 ataacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatgactctc 40945173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 40944979 - 40945077
Alignment:
Q  90 ttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtccaggatatctatgaatacaacgatcctgcat 188  Q
    ||||||||| ||||| ||||| |  ||||||||||| |||||||||| |||||||  |||||| |   |||| || || |||||||||||||| |||||    
T  40944979 ttcctttgtgagtggcacacctaactcagccatacatgcttgcattctatcatcactaccatacaaagcagggtacctctgaatacaacgatcttgcat 40945077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University