View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12786_low_1 (Length: 469)
Name: NF12786_low_1
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12786_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Complemental strand, 37940867 - 37940443
Alignment:
| Q |
13 |
catcatgatgcgacaccatccactgaatctgatgtgaaggaaacatcacagcagatagaaaaggaacttgtagaaaccaatgaagagaatcaacccaaga |
112 |
Q |
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| T |
37940867 |
catcatgatgagacaccatccactgaatctgatgcgaaggaaacatcacagcagatagaaaaggaacttgtagaaaccaatgaagagaatcaacccaaga |
37940768 |
T |
|
| Q |
113 |
tagaagatattccagaagctgaaaccattgaaaaatcagctgaaaccactgaaaaatcaagtgatgcgactgagactaatcaatttgaagagaaggtgaa |
212 |
Q |
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| T |
37940767 |
tagaagatattccagaagc---------------------tgaaaccactgaaaaatcaagtgatgcgactgagactaatcaatttgaagagaaggtgaa |
37940689 |
T |
|
| Q |
213 |
acaagctgaaatttcagaaacaagtgccaaaaaggaagaaaagcccgagcttgagcctctggccacagaagagccgaaagtaacaaaagaaccggaaaaa |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37940688 |
acaagctgaaatttcagaaacaagtgccgaaaaggaagaaaagcccgagcttgagcctctggccacagaagagccgaaagtaacaaaagaaccggaaaaa |
37940589 |
T |
|
| Q |
313 |
gaatcgcaagaaaaatttgaagaggcagagcaaccaaaagcaattgcaattgttgaatctacagtcgaggccaatgaggagaagacagcagcagtgatat |
412 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37940588 |
gaatcacaagaaaaatcagaagaggcagagcaaccaaaagcaattgcaattgttgaatctacagtcgaggccaatgaggagaagacagcagcagcgatat |
37940489 |
T |
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| Q |
413 |
cggaagagaccaaaaacatcgaagtggagcctacagaaacagtgaa |
458 |
Q |
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| T |
37940488 |
cggaagagaccaaaatcatcgaagtggagcctacagaaacagtgaa |
37940443 |
T |
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