View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12786_low_3 (Length: 327)
Name: NF12786_low_3
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12786_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 2619032 - 2619350
Alignment:
| Q |
9 |
gagaagaaaatgagaggaatagtgtggatggacgacaatgtgaaaacaaatcgaaacgaaggtctaccaccggtgaaaatctcaaccgacacatcaaatt |
108 |
Q |
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| T |
2619032 |
gagaagaaaatgagaggaatagtgtggatggacgacaacgtgaaaacaaatccaaacgaaggtctaccaccggtgaaaatctcaaccgacacatcaaatt |
2619131 |
T |
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| Q |
109 |
ttccatacacaaacaaacaaggccaccgttcagctattagaatctcacgcattgtttctgaaacgttgagattaggccttaaagatgtgaggtggtttgt |
208 |
Q |
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| T |
2619132 |
ttccatacacaaacaaacaaggccaccgttccgctattagaatctcacgcattgtttctgaaacgttgagattaggccttaaagatgtgaggtggtttgt |
2619231 |
T |
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| Q |
209 |
aatgggagatgacgacacggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagag |
308 |
Q |
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| T |
2619232 |
aatgggagatgacgacacggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatattgggagtttatcagag |
2619331 |
T |
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| Q |
309 |
agtcatttgcagaatatat |
327 |
Q |
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| T |
2619332 |
agtcatttgcagaatatat |
2619350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 11091929 - 11092061
Alignment:
| Q |
193 |
atgtgaggtggtttgtaatgggagatgacgacacggtgtttgtgacgaataatttgattagggttttgaataagtatgatcataagcagttttactatat |
292 |
Q |
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| T |
11091929 |
atgtgaggtggtttgtgatgggtgatgatgatacattttttgttgctgagaatttggttaatgttttgaagaaatatgatcataatcaattttattacat |
11092028 |
T |
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| Q |
293 |
tgggagtttatcagagagtcatttgcagaatat |
325 |
Q |
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| T |
11092029 |
tggtagtaattcagagagtcatttgcagaatat |
11092061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 30748907 - 30748947
Alignment:
| Q |
193 |
atgtgaggtggtttgtaatgggagatgacgacacggtgttt |
233 |
Q |
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| T |
30748907 |
atgttaggtggtttgtaatgggagatgatgatacggtgttt |
30748947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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