View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12786_low_4 (Length: 324)

Name: NF12786_low_4
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12786_low_4
NF12786_low_4
[»] chr5 (1 HSPs)
chr5 (21-313)||(11709574-11709866)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 11709574 - 11709866
Alignment:
Q  21 ccgctatagcaactactgtgtattggaacttgaacaaaccgccattttccgcaatctgcaattagtaacactgtgtaggctacaaggaacccacattgac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11709574 ccgctatagcaactactgtgtattggaacttgaacaaaccgccattttccgcaatctgcaattagtaacactgtgtaggctacaaggaacccacattgac 11709673  T
Q  121 tatgcatttttccaacnnnnnnnncccttaagcttaaaaattgttttgtttgcagagacttaaaaattgtttttatgtatctttcggatctctgatgggt 220  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11709674 tatgcatttttccaacttttttttcccttaagcttaaaaattgttttgtttgcagagacttaaaaatagtttttatgtatctttcggatctctgatgggt 11709773  T
Q  221 tttcatccatctataactcataactacacaatttttattaataggtaggctatttcaattcctgcctatttctgatgttttgagcctgtctgt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11709774 tttcatccatctataactcataactacacaatttttattaataggtaggctatttcaatacctgcctatttctgatgttttgagcctgtctgt 11709866  T

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