View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12786_low_7 (Length: 249)
Name: NF12786_low_7
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12786_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52767605 - 52767846
Alignment:
| Q |
1 |
catgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaattcat |
100 |
Q |
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| T |
52767605 |
catgtgtttgacactgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaattcat |
52767704 |
T |
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| Q |
101 |
tcctccactacgcctcataataccaaatcttctttcacactcatcaaacgaagaattt---nnnnnnnnnnnnnnnnnntgacccgctccaaacgcattg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
52767705 |
tcctccactacgcctcataataccaaatcttctttcacactcatcaaacgaagaatttctactactactactactactatgacccactccaaacgcattg |
52767804 |
T |
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| Q |
198 |
taaatgttcaagctttgttgtggccatatctctaaccctttg |
239 |
Q |
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| T |
52767805 |
taaatgttcaagctttgttgtggccatatctctaaccctttg |
52767846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7418559 - 7418666
Alignment:
| Q |
1 |
catgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaattcat |
100 |
Q |
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|||| |||||||| |||||||||||||| || ||||||||||| ||||| |||||| |||||||||||| |||||||||||||| || ||||| ||||| |
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| T |
7418559 |
catgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
7418658 |
T |
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| Q |
101 |
tcctccac |
108 |
Q |
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| T |
7418659 |
tccaccac |
7418666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32483059 - 32482965
Alignment:
| Q |
1 |
catgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaa |
95 |
Q |
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| T |
32483059 |
catgagtttgacactgaaaaccacgactcttacaacaagttctacatctcatgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
32482965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 39019413 - 39019486
Alignment:
| Q |
21 |
cctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgaca |
94 |
Q |
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|||| |||||||||||||||||| || ||| || |||||||||||||||||||||| ||||| || ||||| |
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| T |
39019413 |
cctctacttttacaacaagttctacaccttctattactacaatctttctttgcttggtttccacaatcttgaca |
39019486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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