View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12786_low_9 (Length: 229)
Name: NF12786_low_9
Description: NF12786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12786_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52767557 - 52767331
Alignment:
| Q |
1 |
catctctctgcgttaccgtttcgtcgtcgagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctttccctcaac |
100 |
Q |
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| T |
52767557 |
catctctctgcgttaccgtttcgtcgtagagatcatgtagacaattacaaacgacacacagaaattaatcaaggtgcaacctctcttcctttccctcaac |
52767458 |
T |
|
| Q |
101 |
cacccatccctaccacaggtatgtaatgtaatgtaatgttttgtaccctagctagctatacatac---atatataggataagatatagtttttcaataat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
52767457 |
cacccatccctaccacaggtatgtaatgtaatgtaatgttttgtaccctagctagctatgcatacataatatataggataagatatagtttttcaataat |
52767358 |
T |
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| Q |
198 |
tacaaaatgaatagttaattagatttt |
224 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52767357 |
tacaaaatgaatagttaattagatttt |
52767331 |
T |
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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 13800522 - 13800584
Alignment:
| Q |
29 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
91 |
Q |
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| T |
13800522 |
gagatcatggagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttcctt |
13800584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 25570259 - 25570321
Alignment:
| Q |
29 |
gagatcatggagacaattacaaacgacacacagaaactaatcaaggtgcaacctctcttcctt |
91 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||| |
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| T |
25570259 |
gagatcatggagacaattacaaacgacacacataaattaattaaggtgaaacctctcttcctt |
25570321 |
T |
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