View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_14 (Length: 345)
Name: NF12787_high_14
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 55 - 329
Target Start/End: Complemental strand, 31982177 - 31981908
Alignment:
| Q |
55 |
ccttaacaaaattttttgttataaaacaaacaatgcatatgaagagctnnnnnnnngtcatcatggcatggataaagcaactacatttaaacttgaaaac |
154 |
Q |
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| T |
31982177 |
ccttaacaaaattttttgttataaaacaaacaatgcatatgaagagctaaaaaaa-gtcatcata-catggataaagcaactacatttaaacttaaaaac |
31982080 |
T |
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| Q |
155 |
aataaacccaagtgaaaattgtgagaaattaataggnnnnnnnnnnnntgcaggttttaattgaagnnnnnnntgagaataccagaagaagaagaagatg |
254 |
Q |
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| T |
31982079 |
aataaacccaagtgaaaattgggagaaattaataggaaaaacaaaaaatgcaggttttaattgaagaaaaaaatgagaataccagaagaagaaga---tg |
31981983 |
T |
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| Q |
255 |
aagcggcagagcaagtgagtgtaaacttggtgagagagggttttggtttgaatggagaagaaagaaggttgaagc |
329 |
Q |
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| T |
31981982 |
aagcggcagagcaagtgagtgtaaacttggtgagagagggttttggtttgaatggagaagaaagaaggttgaagc |
31981908 |
T |
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