View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12787_high_16 (Length: 332)
Name: NF12787_high_16
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_16 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 28143993 - 28143676
Alignment:
| Q |
1 |
accattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28143993 |
accattgaacaattcttccaaattatgttggttccaaagttttagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtatca |
28143894 |
T |
|
| Q |
101 |
atgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28143893 |
atgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
28143794 |
T |
|
| Q |
201 |
ccccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaaacttatcttccaatacaatagacac |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28143793 |
ccccctcgattcttcttagtctaagaacctctgcttcttgcatgcaatacttgagtgttgtttcagttaggaaaaacttatcttcgaatacaatagacac |
28143694 |
T |
|
| Q |
301 |
acactttgatgatgattc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28143693 |
acactttgatgatgattc |
28143676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 28130065 - 28129748
Alignment:
| Q |
1 |
accattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130065 |
accattgaacaattcttccaaattatcttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
28129966 |
T |
|
| Q |
101 |
atgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28129965 |
atgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
28129866 |
T |
|
| Q |
201 |
ccccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaaacttatcttccaatacaatagacac |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
28129865 |
ccccctcgattcttcttagtgcaagaacctctgcttcttgcatacaatacttgagtgttctttcagttaggaaaaacttatctttgaataaaacagacac |
28129766 |
T |
|
| Q |
301 |
acactttgatgatgattc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28129765 |
acactttgatgatgattc |
28129748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 27464359 - 27464633
Alignment:
| Q |
1 |
accattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||| |||| | |||||| ||||| |||| ||||||| |
|
|
| T |
27464359 |
accattgaacaattcttccaaattttctaggttccaaagatctagtacaaccaacttggagaagacatttggaaattgagaatcagtatgctgagtgtca |
27464458 |
T |
|
| Q |
101 |
atgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
200 |
Q |
| |
|
|||||||| || || |||||||||||| |||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
27464459 |
atgaggcagtgcaactgtgaaatggatatcaaattaagctcgactagatcattcataccatgatccataggaacaatctcaggtatgatgtttctccatc |
27464558 |
T |
|
| Q |
201 |
ccccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27464559 |
ccccctccattcttgttagtctaagaacctctgcttcttgcatacagtacttgagtgttgtttcagataggaaaa |
27464633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 43 - 263
Target Start/End: Complemental strand, 28079477 - 28079257
Alignment:
| Q |
43 |
tagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
28079477 |
tagtacaaccaacttggagaagacttttgacacttgagactcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatctcaattcaagctca |
28079378 |
T |
|
| Q |
143 |
actatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttgca |
242 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||| ||||||||||| ||| |||| |||| ||||||| || ||| ||||||||||||||||||| | |
|
|
| T |
28079377 |
actagatcattcataccatgatccattggaacaatatcaggtatgatatttctccaccccccttcgattcctccaagtctaagaacctctgcttcttgaa |
28079278 |
T |
|
| Q |
243 |
tacaatacttgagtgttgttt |
263 |
Q |
| |
|
||| |||| ||||||||||| |
|
|
| T |
28079277 |
aacagtactcgagtgttgttt |
28079257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 17749326 - 17749599
Alignment:
| Q |
2 |
ccattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaa |
101 |
Q |
| |
|
||||| |||||||||| |||||| | | | ||||||| ||||||||||||||| |||||||||| |||| |||||||| || | ||||||||||||| |
|
|
| T |
17749326 |
ccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaa |
17749425 |
T |
|
| Q |
102 |
tgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattc |
201 |
Q |
| |
|
|||||||| | | ||||||||| || | || |||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||| ||||| | |
|
|
| T |
17749426 |
tgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatcc |
17749525 |
T |
|
| Q |
202 |
cccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
17749526 |
cccctcgattcttcttagtttaagcacctctgcttcttgcatacagtacttgagtgttgtttcagataggaaaa |
17749599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 19050646 - 19050919
Alignment:
| Q |
2 |
ccattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaa |
101 |
Q |
| |
|
||||| |||||||||| |||||| | | | ||||||| ||||||||||||||| |||||||||| |||| |||||||| || | ||||||||||||| |
|
|
| T |
19050646 |
ccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaa |
19050745 |
T |
|
| Q |
102 |
tgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattc |
201 |
Q |
| |
|
|||||||| | | ||||||||| || | || |||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||| ||||| | |
|
|
| T |
19050746 |
tgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatcc |
19050845 |
T |
|
| Q |
202 |
cccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
19050846 |
cccctcgattcttcttagtttaagcacctctgcttcttgcatacagtacttgagtgttgtttcagataggaaaa |
19050919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 275
Target Start/End: Complemental strand, 28178100 - 28177877
Alignment:
| Q |
43 |
tagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctca |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
28178100 |
tagtacaaccaacttggagaagacttttgaaactggagaat---------tagtgtcaatgaggcactgtaattgtgaaatggatctcaaaccaagctcg |
28178010 |
T |
|
| Q |
143 |
actatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttgca |
242 |
Q |
| |
|
| || |||||||||||| ||||||| |||||||||||||||| ||||||| |||| ||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
28178009 |
attagatcattcataccatgatccagaggaacaatctcaggtacgatgtttctccaccccccctcgattcttcctagttcaagaacctctgcttcttgca |
28177910 |
T |
|
| Q |
243 |
tacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
28177909 |
tacaatacttgagtgttgtttcagataggaaaa |
28177877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 27909873 - 27909639
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
27909873 |
tctagtacaaccaacttggagaagacttttgatacttgagagatgacatgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagct |
27909774 |
T |
|
| Q |
141 |
caactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttg |
240 |
Q |
| |
|
|||||| |||||||||||| || | || |||| |||||||||||||| ||| ||||| |||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
27909773 |
caactagatcattcataccatgtttcaaaggaatcatctcaggtatgatatttctccatcccccctcgattcttcttagtctaataacctctgcttcttg |
27909674 |
T |
|
| Q |
241 |
catacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27909673 |
catacagtacttgagtgttgtttcagataggaaaa |
27909639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27962983 - 27962709
Alignment:
| Q |
1 |
accattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | | |||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
27962983 |
accattgaacaattcttccaaattttctaggttcctaagttctaggccaaccaacttggagaagacttttgttacttgagattcaaaatgcttactgtca |
27962884 |
T |
|
| Q |
101 |
atgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
200 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||| |||||| |||| |||||||||||| || ||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
27962883 |
atgaggcaacgtaattgtgaattggatcccaatgaaagctcgactagatcattcataccatgctccataggaacaatctcaggtatgatatttctccatc |
27962784 |
T |
|
| Q |
201 |
ccccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||| ||| |||||| ||| |||||| | |||||||| |
|
|
| T |
27962783 |
ccccctccattcttcttagtccaagaaactctgcttcttgcaaacagtacttgtgtgatgtttcggataggaaaa |
27962709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 275
Target Start/End: Original strand, 28472351 - 28472585
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagct |
140 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||||| || ||||||||||||||||| |||| ||||||||| | ||||| ||||| |
|
|
| T |
28472351 |
tctagtacaaccaacttggagaatacttttgatactagagattcagtatgtttagtgtcaatgaggcattgtagttgtgaaatactactcaaactaagct |
28472450 |
T |
|
| Q |
141 |
caactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttg |
240 |
Q |
| |
|
| |||| |||||||||||| || ||||| |||||||||||||| || || ||| ||||| ||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
28472451 |
cgactagatcattcataccatggtccataggaacaatctcaggcatcatatttctccatcccccctccatccttcttagtctaagaacctctgcttcttg |
28472550 |
T |
|
| Q |
241 |
catacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
28472551 |
catacaatacttgagtgttgtttcacataggaaaa |
28472585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 275
Target Start/End: Original strand, 28492392 - 28492626
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagct |
140 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||||| || ||||||||||||||||| |||| ||||||||| | ||||| ||||| |
|
|
| T |
28492392 |
tctagtacaaccaacttggagaatacttttgatactagagattcagtatgtttagtgtcaatgaggcattgtagttgtgaaatactactcaaactaagct |
28492491 |
T |
|
| Q |
141 |
caactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttg |
240 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||| || || ||| ||||| ||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
28492492 |
tgactagatcattcataccatgatccataggaacaatctcaggcatcatatttctccatcccccctccatccttcttagtccaagaacctctgcttcttg |
28492591 |
T |
|
| Q |
241 |
catacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
28492592 |
catacaatacttgagtgttgtttcagataggaaaa |
28492626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 275
Target Start/End: Original strand, 28513370 - 28513607
Alignment:
| Q |
38 |
agttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaa |
137 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| | || || |||||||||||||| |||| |||||||||| ||| |||| || |
|
|
| T |
28513370 |
agttctagtacagccaacttggagaagacttttgatacttgagattcgatatgtttggtgtcaatgaggcattgtagttgtgaaatgcatctcaaagtaa |
28513469 |
T |
|
| Q |
138 |
gctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttc |
237 |
Q |
| |
|
|||| |||| |||||||||||| |||||| |||||||| ||||| || || ||| ||||| ||||||| |||||||||||| | |||| ||| ||||| |
|
|
| T |
28513470 |
gctcgactagatcattcataccacaatccataggaacaatttcaggaatcatatttctccatcccccctccattcttcttagtcttagaatctcagcttc |
28513569 |
T |
|
| Q |
238 |
ttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28513570 |
ttgcatacaatacctgagtgttgtttcagataggaaaa |
28513607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 43 - 263
Target Start/End: Complemental strand, 11408867 - 11408647
Alignment:
| Q |
43 |
tagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctca |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| || | || ||| |||||||||||||||| | || |||||||||| ||| ||| |||||||| |
|
|
| T |
11408867 |
tagtacaaccaacttgcagaagacttttgatacttgatatccggtatgcatagtgtcaatgaggcattttagttgtgaaatgcatcttaaatgaagctca |
11408768 |
T |
|
| Q |
143 |
actatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttgca |
242 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| || ||||||||||| ||| ||||||||||| ||||||||| |||| |||||||||||| || ||||| |
|
|
| T |
11408767 |
actagatcattcataccttgatctaaaggaaccatttcaggtatgatatttctccattcccccacgattcttcctagtctaagaacctctgatttttgca |
11408668 |
T |
|
| Q |
243 |
tacaatacttgagtgttgttt |
263 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11408667 |
tacaatacatgagtgttgttt |
11408647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 27998683 - 27998431
Alignment:
| Q |
11 |
aattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcact |
110 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | |
|
|
| T |
27998683 |
aattcttccaaattatctaggttccaaagttctagcacaaccaacttggagaagacttttc------------cagtatgcttagtgtcaatgaggcatt |
27998596 |
T |
|
| Q |
111 |
gtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgat |
210 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||||||| ||| |||| |||| |||||||||||||| ||| ||| | ||||||| || |
|
|
| T |
27998595 |
gtaattgtgaaatggatctcaaatcaagctcaactagatcattcataccatgacccataggaatcatctcaggtatgatatttctccctcccccctccat |
27998496 |
T |
|
| Q |
211 |
tcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||| | |||||||||||||| || |||||||| |
|
|
| T |
27998495 |
tctatttatcttaagaacctctgcttcttgcatacagtccttgagtgttgttttagataggaaaa |
27998431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 27434884 - 27435029
Alignment:
| Q |
130 |
caaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacc |
229 |
Q |
| |
|
||||| ||| |||||| ||| |||||||||||||||||| | ||||||||| ||||||| ||| ||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
27434884 |
caaactaagttcaactgtataattcataccttgatccatagaaacaatctcgggtatgagatttctccattccctctcgaagcttcttagtctaagaacc |
27434983 |
T |
|
| Q |
230 |
tctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||| || ||||| |
|
|
| T |
27434984 |
tctgcttcttgcagacaataccttagtgttgtttcagataagaaaa |
27435029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 275
Target Start/End: Complemental strand, 27952247 - 27952010
Alignment:
| Q |
38 |
agttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaa |
137 |
Q |
| |
|
|||| ||| |||||||||||||| |||| |||| ||||| | || || |||||||||||||||||| |||| | |||||||||| | |||||| || |
|
|
| T |
27952247 |
agttttagaacaaccaacttggacaagaaatttggttcttgaaaatctgtatgcttagtgtcaatgaggaactgaagttgtgaaatgcaatgcaaactaa |
27952148 |
T |
|
| Q |
138 |
gctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttc |
237 |
Q |
| |
|
||||| |||||| |||||||||||| ||| | |||||| | ||||||| ||| ||||| ||| | |||||||||||| |||||| ||| ||| |
|
|
| T |
27952147 |
gctcagctatatttctcataccttgatgcatcgaaacaatattgggtatgagatttatccatcccctttgtattcttcttagtttaagaatctcagctgt |
27952048 |
T |
|
| Q |
238 |
ttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27952047 |
ttgcatacagtacttgagtgttgtttcagataggaaaa |
27952010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 26117270 - 26117407
Alignment:
| Q |
43 |
tagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctca |
142 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||| | | | || |||||||| | |||||||||| ||||||||| || ||||| ||||||| |
|
|
| T |
26117270 |
tagtacaaccaacttggagaaaacaattggtacttgagaattaatatgtttagtgtctacaaggcactgtagttgtgaaatttctcccaaacaaagctca |
26117369 |
T |
|
| Q |
143 |
actatatcattcataccttgatccatgggaacaatctc |
180 |
Q |
| |
|
| || |||||||||||||| ||| || ||||||||||| |
|
|
| T |
26117370 |
attagatcattcataccttcatctataggaacaatctc |
26117407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 28047524 - 28047284
Alignment:
| Q |
9 |
acaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggca |
108 |
Q |
| |
|
|||||||||||||||| | | |||||||||| | ||| ||||||||||||||||||| |||| |||||||||| ||||||||| ||| |
|
|
| T |
28047524 |
acaattcttccaaattttctaggttccaaagatgaagttcaaccaacttggagaagaccgttgatacttgagatt---------tagtgtcaacaagg-- |
28047436 |
T |
|
| Q |
109 |
ctgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcg |
208 |
Q |
| |
|
||||| ||||| |||| |||| ||||| |||| || ||||||||| ||||||| |||||||| ||||||||||| ||| |||| || || |
|
|
| T |
28047435 |
---taattttgaaaaggatatcaaattaagcttgactagattattcataccatgatccaaaggaacaatatcaggtatgatatttctccaccacctttca |
28047339 |
T |
|
| Q |
209 |
attcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgttt |
263 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
28047338 |
attcctctaagtctaagaacctctgcttcttgcaaacagtactcgaatgttgttt |
28047284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 26145274 - 26145411
Alignment:
| Q |
43 |
tagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctca |
142 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||||||| | | | || |||||||| | |||||||||| ||||||||| || || | |||||||| |
|
|
| T |
26145274 |
tagtacaaccaacttagagaaaacaattggtacttgagaattaatatgtttagtgtctactaggcactgtagttgtgaaatttctctcagatgaagctca |
26145373 |
T |
|
| Q |
143 |
actatatcattcataccttgatccatgggaacaatctc |
180 |
Q |
| |
|
| || |||||||||||||||||| || ||||| ||||| |
|
|
| T |
26145374 |
attagatcattcataccttgatctataggaaccatctc |
26145411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 26624469 - 26624394
Alignment:
| Q |
130 |
caaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccc |
205 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| | || || |||||||||||||| |||| ||| ||||| ||||| |
|
|
| T |
26624469 |
caaatgaagctcaacaatatcattcatacctagttctataggaacaatctcaggcatgagatttctccatcccccc |
26624394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 27401382 - 27401457
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagact---tttgacacttgagattcagtgtgcttagtgtcaatgaggcactgta |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| ||| | || |||||||| ||||||||||||| |
|
|
| T |
27401382 |
tctagtacaaccaacttggagaagacaacatttggtacttgagaatcaatatgtttagtgtctatgaggcactgta |
27401457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 26027202 - 26027513
Alignment:
| Q |
1 |
accattaaacaattcttccaaattatgttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | | |||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
26027202 |
accattgaacaattcttccaaattttctaggttagaaagatctagtacaatcaacttggagaagacttttgatacttgagattcagtaggcttagtgtta |
26027301 |
T |
|
| Q |
101 |
atgaggcactgtaattgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccatt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||| ||||||||||||| ||||| ||| |||| |
|
|
| T |
26027302 |
atgaggtactgtaattgtgaaatggatctcaaagaaagctcgactagatcattcataccatgatccatatgaacaatctcaggcatgatatttctccacc |
26027401 |
T |
|
| Q |
201 |
ccccctcgattcttcttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaaacttatcttccaatacaatagacac |
300 |
Q |
| |
|
| ||||| || ||| ||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||||| |||||| |
|
|
| T |
26027402 |
ctccctcaatccttgttagtctaagaatttctgcttcttgcatacaatactcgagtgttgtttcagataggaaaaactcatagttgtgtacaaaagacac |
26027501 |
T |
|
| Q |
301 |
acactttgatga |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26027502 |
acactttgatga |
26027513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 9330297 - 9330532
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| | || |||| ||||| ||| |||| |||||| |
|
|
| T |
9330297 |
tctagtacaaccaacttggagaagacttttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagct |
9330396 |
T |
|
| Q |
141 |
caactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttg |
240 |
Q |
| |
|
|| | | |||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | | | ||| | |||||| |||||| |
|
|
| T |
9330397 |
cagccagatcattcataccttgatccaaaggaacaatctcaggtatgatgtttctccacaccctctcgattctacacaatctaataccctctgattcttg |
9330496 |
T |
|
| Q |
241 |
catacaatacttgagtgttgtttcagttaggaaaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9330497 |
catacaatacttgagtgttgtttcagataggaaaaa |
9330532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 9384080 - 9384315
Alignment:
| Q |
41 |
tctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagct |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| | || |||| ||||| ||| |||| |||||| |
|
|
| T |
9384080 |
tctagtacaaccaacttggagaagacttttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagct |
9384179 |
T |
|
| Q |
141 |
caactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttg |
240 |
Q |
| |
|
|| | | |||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | | | ||| | |||||| |||||| |
|
|
| T |
9384180 |
cagccagatcattcataccttgatccaaaggaacaatctcaggtatgatgtttctccacaccctctcgattctacacaatctaataccctctgattcttg |
9384279 |
T |
|
| Q |
241 |
catacaatacttgagtgttgtttcagttaggaaaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9384280 |
catacaatacttgagtgttgtttcagataggaaaaa |
9384315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 306
Target Start/End: Original strand, 8694723 - 8694987
Alignment:
| Q |
42 |
ctagtacaaccaacttggagaagacttttgacacttgagattcagtgtgcttagtgtcaatgaggcactgtaattgtgaaatggatcgcaaacgaagctc |
141 |
Q |
| |
|
|||||||||| |||||||||||||| |||| || ||||| ||| | ||||||||||| | |||||| |||| |||||||||| ||| ||| ||||||| |
|
|
| T |
8694723 |
ctagtacaactaacttggagaagacaattgatacatgagaatcaatatgcttagtgtctaagaggcattgtagttgtgaaatgcatcttaaatgaagctc |
8694822 |
T |
|
| Q |
142 |
aactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattcttcttagtataagaacctctgcttcttgc |
241 |
Q |
| |
|
||||| |||||||||||| ||||| || |||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8694823 |
aactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatcccccctcgattcttcttagtctaagaacctctgctgcttgc |
8694922 |
T |
|
| Q |
242 |
atacaatacttgagtgttgtttcagttaggaaaaacttatcttccaatacaatagacacacactt |
306 |
Q |
| |
|
||||| ||||| |||||| ||| || ||||||| || ||||| ||| || |||||||||||| |
|
|
| T |
8694923 |
atacagtacttaagtgttatttgagaaaggaaaacctcatctttgtatataaaagacacacactt |
8694987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 23957 - 23797
Alignment:
| Q |
115 |
ttgtgaaatggatcgcaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgtttttccattccccctcgattctt |
214 |
Q |
| |
|
|||||||||| | | ||||| ||| ||||||||||| ||||||||||||||||| | |||||||| ||||||| ||| ||||| || |||||||||| |
|
|
| T |
23957 |
ttgtgaaatgcaactcaaactaagttcaactatatctttcataccttgatccatagaaacaatctggggtatgagatttctccatcccgtctcgattctt |
23858 |
T |
|
| Q |
215 |
cttagtataagaacctctgcttcttgcatacaatacttgagtgttgtttcagttaggaaaa |
275 |
Q |
| |
|
|||||| |||||||||| | | ||||||||| ||||||||||||| ||||| || ||||| |
|
|
| T |
23857 |
cttagtctaagaacctcggttgtttgcatacagtacttgagtgttgcttcagataagaaaa |
23797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 4426 - 4454
Alignment:
| Q |
38 |
agttctagtacaaccaacttggagaagac |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4426 |
agttctagtacaaccaacttggagaagac |
4454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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