View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_18 (Length: 323)
Name: NF12787_high_18
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 43470868 - 43471184
Alignment:
| Q |
1 |
aaaaatgaaaagtgttggcggatggtggttactacttgtatactttatagaaatttaatctaacttactgtatttttaaaaataaaatgaataattacca |
100 |
Q |
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| T |
43470868 |
aaaactgagaagtgttggcagatggtggttactacttgtatactttatagaaatttaatctagcttgctgtgtttt-acaaataaaataaatagtcacca |
43470966 |
T |
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| Q |
101 |
ttcgtctaaattcgtgcaagactctgtcgtaacattaaacattttccatgaacaaatgctatatacagcgaatgaaaaaatcgcgagcacaccacgaata |
200 |
Q |
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| T |
43470967 |
ttcgtctaaatttgtgcaagactctgtcgtaacattaagcattttccatgaacaaatgctatatacagcgaatgaaaaaatcgcgagcacaccacgaata |
43471066 |
T |
|
| Q |
201 |
acttgatgaaagtaaaagtgacccactgca----cattacaggtgtcgtgatactcttgtgagatggtatgtcgcgctatat-------atcatgatcca |
289 |
Q |
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| T |
43471067 |
acttgatgaaagtaaaagggacccactgcaaatgcattacaggtgtcgtgatactcttgtgagatggtatgtcgcgctatatatcatgaatcatgatcca |
43471166 |
T |
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| Q |
290 |
taaggaatattaagtttc |
307 |
Q |
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| T |
43471167 |
taaggaatattaagtttc |
43471184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 4086302 - 4086158
Alignment:
| Q |
1 |
aaaaatgaaaagtgttggcggatggtggttactacttgtatactttatagaaatttaatctaacttactgtatttttaaaaataaaatgaataattacca |
100 |
Q |
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| T |
4086302 |
aaaactgagaagtgttggcagatggtggttactgct-gtatactctatagaaatttaatctagcttgttg-ggttttgaaaataaaatgaataattacca |
4086205 |
T |
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| Q |
101 |
ttcgtctaaattcgtgcaagactctgtcgtaacattaaacattttcc |
147 |
Q |
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| T |
4086204 |
ttcgtctaaatttatgcaagactatgtggtaacattaagcattttcc |
4086158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7755652 - 7755504
Alignment:
| Q |
1 |
aaaaatgaaaagtgttggcggatggtggttactacttgtatactttatagaaatttaatctaacttactgtatttttaaaaataaaatgaataattacca |
100 |
Q |
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| T |
7755652 |
aaaactgagaagtgttggcagatggtagttactccta-tatactttatagaaatttaatctagcttgttg-ggttttaaaaataaaatgaatagttacta |
7755555 |
T |
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| Q |
101 |
ttcgtctaaattcgtgcaagac--tctgtcgtaacattaaacattttccat |
149 |
Q |
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| T |
7755554 |
ttcgtataaattcgtacaataccgtgtctcgtaacattaagcattttccat |
7755504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 26153320 - 26153223
Alignment:
| Q |
49 |
agaaatttaatctaacttactgtatttttaaaaataaaatgaataattaccattcgtctaaattcgtgcaagactctgtcgtaacattaaacattttcc |
147 |
Q |
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| T |
26153320 |
agaaatttaatctagcttgttggattttgaaaa-taaaatgaatagttaccattcgtctaaattcgtgcaagattgtgtcgtaacattaagcattttcc |
26153223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 2210344 - 2210452
Alignment:
| Q |
37 |
tgtatactttatagaaatttaatctaacttactgtatttttaaaaataaaatgaataattacc-attcgtctaaattcgtgcaagactctgtcgtaacat |
135 |
Q |
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| T |
2210344 |
tgtatactctatagaaatttaatctagcttgttggattttgaaaa-taaaatgaatagttacccattcgtctaaattcgtgcaagactatgtcgtaatat |
2210442 |
T |
|
| Q |
136 |
taaacatttt |
145 |
Q |
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||| |||||| |
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| T |
2210443 |
taagcatttt |
2210452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 41294457 - 41294591
Alignment:
| Q |
13 |
tgttggcggatggtggttactacttgtatactttatagaaatttaatctaacttactgtatttttaaaaataaaatgaataattaccattcgtctaaatt |
112 |
Q |
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| T |
41294457 |
tgttggcagatggtagttactccta-tattctttatagaaatttaatctagcttgttg-ggttttgaaaataaaatgaatagttactattcgtataaatt |
41294554 |
T |
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| Q |
113 |
cgtgcaagactctg--tcgtaacattaaacattttcc |
147 |
Q |
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| T |
41294555 |
cgtgcaagactgtgtctcgtaacatcaagcattttcc |
41294591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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