View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_20 (Length: 312)
Name: NF12787_high_20
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 49985525 - 49985797
Alignment:
| Q |
15 |
cacagattatgttgatagtgagacttcagattcagaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcgttaggccaaaaat |
114 |
Q |
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| T |
49985525 |
cacagattatgttgatagtgagacttcagattcagaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcattaggcccaaaat |
49985624 |
T |
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| Q |
115 |
ctgttccctttggttctggcttcgttaagttacaagacatgaaagtttctaattcacaatttatgtacgtattacttaatttttgtagtgtttgctaaga |
214 |
Q |
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| T |
49985625 |
ccgttccctttggttctggcttcgttaagttacaagacacgaaagtttctaattcacaatttat----gtattacttaatttttgtagtgtttgctaaga |
49985720 |
T |
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| Q |
215 |
agcatttacactaaaatgtacaccggacacaacgccaacaagtatacactagtaacgatttgtgaaaatagaagtga |
291 |
Q |
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| T |
49985721 |
agcatttacactaaaatgtacaccggatacgacgccaacaagtatacactagtaacgatttgtgaaaatagaagtga |
49985797 |
T |
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