View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_26 (Length: 250)
Name: NF12787_high_26
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 54277657 - 54277414
Alignment:
| Q |
1 |
ttaaacatactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54277657 |
ttaaacatactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcatt |
54277558 |
T |
|
| Q |
101 |
attttgtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgnnnnnnnccaatgaaagttatgttacttataactttagtatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54277557 |
attttgtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgaaacaaaccaatgaaagttatgttacttataactttagtatga |
54277458 |
T |
|
| Q |
201 |
aacaatatgttttagattgaatctatgtacctttttcatctcac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54277457 |
aacaatatgttttagattgaatctatgtacctttttcatctcac |
54277414 |
T |
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