View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_28 (Length: 241)
Name: NF12787_high_28
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34748173 - 34748395
Alignment:
| Q |
1 |
taacatagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggttagaataaataaattttacagaaacaatgctggtgtattc |
100 |
Q |
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| T |
34748173 |
taacatagtgaaagaaaatgggtaaaagtaatgatattttatgatatgtacactaatggttagaataaataaattttacagaaacaatgctggtgtattc |
34748272 |
T |
|
| Q |
101 |
tctcaagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattcttaattcttaatgcatatttggta |
200 |
Q |
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| T |
34748273 |
tctcaagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattcttaattcttaatgcatatttggta |
34748372 |
T |
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| Q |
201 |
tcataatggtacataatgaaagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34748373 |
tcataatggtacataatgaaagt |
34748395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 7970640 - 7970434
Alignment:
| Q |
4 |
catagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggttagaataaataaattttacagaaacaatgctggtgtattctct |
103 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7970640 |
catagtgaaataaaatgggaaaaagtaatgatatttaatgatagggacactaatggttagaataaataaattttacagaaacaatgctggtatattctct |
7970541 |
T |
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| Q |
104 |
caagatttggagttctctgctgagaaaattgagatgacatttgccacaaattacttaggtacatttctaattcttaattcttaatgcatatttggtatca |
203 |
Q |
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| T |
7970540 |
caagttttggagttttctgcagagaaaattgagatgacatttgccacaaattatttggatacatttctaatttttaattcttgatgcatatttggtatca |
7970441 |
T |
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| Q |
204 |
taatggt |
210 |
Q |
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| T |
7970440 |
tagtggt |
7970434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 43689982 - 43690036
Alignment:
| Q |
125 |
gagaaaattgagatgacatttgccacaaattacttaggtacatttctaattctta |
179 |
Q |
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| T |
43689982 |
gagaaaattgaattgacatttgctacaaattacttaggtacttttttcattctta |
43690036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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