View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_29 (Length: 240)
Name: NF12787_high_29
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 42789351 - 42789561
Alignment:
| Q |
19 |
tagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgagg |
118 |
Q |
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| T |
42789351 |
tagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaag |
42789450 |
T |
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| Q |
119 |
ggtttgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagcttttggtgtaatttgaaaattgtttgatct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789451 |
ggtttgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagcttttggtgtaatttgaaaattgtttgatct |
42789550 |
T |
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| Q |
219 |
gttgcagtgaa |
229 |
Q |
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| T |
42789551 |
gttgcagtgaa |
42789561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 42798889 - 42799100
Alignment:
| Q |
19 |
tagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgagg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
42798889 |
tagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaag |
42798988 |
T |
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| Q |
119 |
ggtttgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagc-ttttggtgtaatttgaaaattgtttgatc |
217 |
Q |
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| T |
42798989 |
ggtttgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagctttttggtgtaatttgaaaattgtttgatc |
42799088 |
T |
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| Q |
218 |
tgttgcagtgaa |
229 |
Q |
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| T |
42799089 |
tgttgcagtgaa |
42799100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 34567024 - 34567220
Alignment:
| Q |
19 |
tagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgagg |
118 |
Q |
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|||||||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| || | ||| ||||| || ||||| | |
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| T |
34567024 |
tagatttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatg |
34567123 |
T |
|
| Q |
119 |
ggtttgtgatcagcactccactcactttcatgttcattgattctgcttctttgtaagctgcttctaaagcttttggtgtaatttgaaaattgtttga |
215 |
Q |
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|||| || || || ||| | | |||||||||||||| |||||||| | |||||| || | |||||| |||| |||| ||||||||||||||||| |
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| T |
34567124 |
ggttggttataagtactgcttttactttcatgttcatggattctgcatttttgtatgcagtttctaatgcttcaagtgtgatttgaaaattgtttga |
34567220 |
T |
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