View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_3 (Length: 496)
Name: NF12787_high_3
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 27774793 - 27775261
Alignment:
| Q |
18 |
gttagtgggtctaggcaattccatgtcctatatggtccttgtagcaaggaacatggctacatatttcagttaaatgaactgtgggtctagccatcttgta |
117 |
Q |
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| T |
27774793 |
gttagtgggtctaggcaattccatgtcctatatggtccttgtaacaagggacatggctacatatttcagttaaatgaactgtgggtctagccatcttgta |
27774892 |
T |
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| Q |
118 |
gtaactacaaaataatgtgaacttgtcttgttttatttcctttcctttaatacacttccattttcaactctttatcagccacatatcactttcaaatggt |
217 |
Q |
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| T |
27774893 |
gtaactacaaaataatgtgaacttgtcttgttttatttcctttcctttaatacacttccattttcaactctttatcagccacatatcactttcaaatggt |
27774992 |
T |
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| Q |
218 |
ttggatcaaattgaacttgcttccacaaacacaccaacacttgcatagttgctttgaatggataaacgacgaatactatgttttgtaagaagcataatat |
317 |
Q |
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| T |
27774993 |
ttggatcaaattgaacttgcttctacaaacacaccaacacttgcatagttgctttgaatggataaacgacgaatactatgttttgtaagaagcataatat |
27775092 |
T |
|
| Q |
318 |
ttgatatgaattagtggaaattatacaagtttgacaagcttttgctctatctagtatttgcatctctactttaagattgtgtaagtttgaacatattt-g |
416 |
Q |
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| T |
27775093 |
ttgatatgaattagtggaaattatacaagtttgacaagcttttgctctatctagtatttgcatctctactttaagattgtgtaagtttgaacccatttgg |
27775192 |
T |
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| Q |
417 |
ggttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctct |
485 |
Q |
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| T |
27775193 |
ggttggtctattgattgctttgagattttggagtatgctcctatcaagttcacaggttcgattatctct |
27775261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 486
Target Start/End: Original strand, 2755570 - 2755640
Alignment:
| Q |
416 |
gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctctg |
486 |
Q |
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|||||||| ||||||||| ||| ||| |||||||||||||| ||||||| || ||||| ||||||||||| |
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| T |
2755570 |
gggttggtatagtggttggttttagaccttgaagtatgctcatctcaaggtcttaggtttgattatctctg |
2755640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 485
Target Start/End: Original strand, 52135134 - 52135203
Alignment:
| Q |
416 |
gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctct |
485 |
Q |
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| T |
52135134 |
gggttggtctagtggttgacttgggatcttggagtttgctcatctcaatgtctcaggttcgattatctct |
52135203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 32526269 - 32526215
Alignment:
| Q |
425 |
tagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgatt |
479 |
Q |
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| T |
32526269 |
tagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt |
32526215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 14946785 - 14946853
Alignment:
| Q |
418 |
gttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctctg |
486 |
Q |
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| T |
14946785 |
gttggcctagtggttgacttgagatcttgaagtttgctcctctcaaggttttaggttcgattttctctg |
14946853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 33696245 - 33696197
Alignment:
| Q |
416 |
gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaag |
464 |
Q |
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| T |
33696245 |
gggttggtctagcggttgatttgaggtcttgaagtgtgctcctctcaag |
33696197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 43719258 - 43719218
Alignment:
| Q |
416 |
gggttggtctagtggttgctttgagatcttgaagtatgctc |
456 |
Q |
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| T |
43719258 |
gggttggtctagtggttggtttgagatcttggagtttgctc |
43719218 |
T |
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