View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12787_high_32 (Length: 225)
Name: NF12787_high_32
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 15226678 - 15226896
Alignment:
| Q |
1 |
acgtttggcaagagagaaactttcctttaaggtgttacaagcatttgaagttatataaatgtgcacaatagtttgggcaatcgaaggcgtaactgaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |
|
|
| T |
15226678 |
acgtttggcaagagagaaactttcctttaaggtgttacaagcatttgaagttatataaatgtgcaaaatagtttgggcaatcaaaggcgtaaccgaattc |
15226777 |
T |
|
| Q |
101 |
aggattgttggtgagaggatcaaaagttgatagaaaacaa----------gagaaaatgcaagaaagtagtagaagttgaatcatattttttgggattga |
190 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15226778 |
aggattgctggtgagaggatcaaaagttgatagaaaacaagagaaaagaggagaaaatgcaagaaagtagtagaagttgaatcatattttttcggattga |
15226877 |
T |
|
| Q |
191 |
ttatgctataagttgttta |
209 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15226878 |
ttatgctataagttgttta |
15226896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University