View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_6 (Length: 400)
Name: NF12787_high_6
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 36576680 - 36576455
Alignment:
| Q |
19 |
tcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatatgttcccca |
118 |
Q |
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| T |
36576680 |
tcaccaaacacaattactgctggtacataattttcattattgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatatgttcccca |
36576581 |
T |
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| Q |
119 |
taataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcgggccagtccaataattttaataaataaatgagagcaa |
218 |
Q |
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| T |
36576580 |
taataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcgggtcagtccaataatttttaaaaataaatgagagcaa |
36576481 |
T |
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| Q |
219 |
aagcaaaattttaatatatgtagcctc |
245 |
Q |
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| T |
36576480 |
aagcaaaa-tttaatatatgtagcctc |
36576455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 36576380 - 36576307
Alignment:
| Q |
317 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacatacaaatattttaatttcttaacaatggtttcat |
390 |
Q |
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| T |
36576380 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacataaaaatattttaatttctcaacaatggtttcat |
36576307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 36564052 - 36563959
Alignment:
| Q |
18 |
atcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatatg |
111 |
Q |
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| T |
36564052 |
atcaccaaagacaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttgggttatcaatattaaccatgctatgcatatg |
36563959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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