View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_high_7 (Length: 391)
Name: NF12787_high_7
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39187609 - 39187803
Alignment:
| Q |
1 |
agagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaacgtattgcatagaagcgagaatgtactacat |
100 |
Q |
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| T |
39187609 |
agagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaatgtattgcatagaagcgagaatgtactacat |
39187708 |
T |
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| Q |
101 |
catatgcatcgccttaatatccttacgcctgtgtataaattaaaagtaaattcattttacaacaagaagcaactgcttgttcatgtaaaactcgg |
195 |
Q |
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| T |
39187709 |
catatgcatcgccttaatatccatacgcctgtgtatagattaaaagtaaattcattttacaacaagaagcaactccttgttcatgtaaaactcgg |
39187803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 224 - 375
Target Start/End: Original strand, 39187829 - 39187980
Alignment:
| Q |
224 |
gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat |
323 |
Q |
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| T |
39187829 |
gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat |
39187928 |
T |
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| Q |
324 |
ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttct |
375 |
Q |
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| T |
39187929 |
ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttct |
39187980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 2889044 - 2889092
Alignment:
| Q |
225 |
taaacaagagaattgattttctataagatgagatacagcagccatacct |
273 |
Q |
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| T |
2889044 |
taaacaagagatgtgattttctataagatgggagacagcagccatacct |
2889092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 3145818 - 3145770
Alignment:
| Q |
225 |
taaacaagagaattgattttctataagatgagatacagcagccatacct |
273 |
Q |
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| T |
3145818 |
taaacaagagatgtgattttctataagatgggagacagcagccatacct |
3145770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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