View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12787_low_1 (Length: 579)
Name: NF12787_low_1
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Complemental strand, 36424939 - 36424390
Alignment:
| Q |
11 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424939 |
caaaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
36424840 |
T |
|
| Q |
111 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36424839 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtgtgtggtgga |
36424740 |
T |
|
| Q |
211 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
36424739 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatg |
36424640 |
T |
|
| Q |
311 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424639 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggat |
36424540 |
T |
|
| Q |
411 |
gtctggatcaccagctagtgttatttgcacaatggcaaatgcagatatgattagtgtgaggagttttgaagctgtggaagaagacattgtgtatgatttg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424539 |
gtctggatcaccagctagtgttatttgcacaatggcaaatgcagatatgattagtgtgaggagttttgaagctgtggaagaagacattgtgtatgatttg |
36424440 |
T |
|
| Q |
511 |
atggaatgttcaaaatttggggttattgaggaaaagctagatcaatgaat |
560 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36424439 |
atggaatgttcaaaatttgaggttattgaggaaaagctagatcaatgaat |
36424390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Complemental strand, 36421415 - 36420908
Alignment:
| Q |
11 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36421415 |
caaaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccaggttgtagtgt |
36421316 |
T |
|
| Q |
111 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
210 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421315 |
ctgagtgaatagcttattggttgtgtcaacaaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
36421216 |
T |
|
| Q |
211 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
36421215 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatg |
36421116 |
T |
|
| Q |
311 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36421115 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtgaggat |
36421016 |
T |
|
| Q |
411 |
gtctggatcaccagctagtgttatttgcacaatggcaaatgcagatatgattagtgtgaggagttttgaagctgtggaagaagacattgtgtatgatttg |
510 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||||||||||||||||||||||||| |
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| T |
36421015 |
gtccggatcaccagctaatgttatttgcacaatggcaaatgcagatatgattagtgttagcatttttgatgttgtggaagaagacattgtgtatgatttg |
36420916 |
T |
|
| Q |
511 |
atggaatg |
518 |
Q |
| |
|
|| ||||| |
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| T |
36420915 |
atagaatg |
36420908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 483
Target Start/End: Complemental strand, 36427912 - 36427440
Alignment:
| Q |
11 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
110 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36427912 |
caaaggcagaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgt |
36427813 |
T |
|
| Q |
111 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
210 |
Q |
| |
|
||||||| ||||||| || || ||||| || ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36427812 |
ttgagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtgga |
36427713 |
T |
|
| Q |
211 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
310 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||| || |
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|
| T |
36427712 |
ttgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttg |
36427613 |
T |
|
| Q |
311 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggat |
410 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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|
| T |
36427612 |
agggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggat |
36427513 |
T |
|
| Q |
411 |
gtctggatcaccagctagtgttatttgcacaatggcaaatgcagatatgattagtgtgaggagttttgaagct |
483 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
36427512 |
gtctggatcactagctagtgttatttgcacaatggcaaatgcagatatgattagtgttagcatttttgaagct |
36427440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 19148475 - 19148343
Alignment:
| Q |
130 |
gttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggt |
229 |
Q |
| |
|
||||||||||| || ||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| ||| | |||| || |
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| T |
19148475 |
gttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttgga |
19148376 |
T |
|
| Q |
230 |
acattagagcagcatatgatacactttgtccat |
262 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
19148375 |
attgaagagcagcatatgacacactttgtccat |
19148343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 19144520 - 19144650
Alignment:
| Q |
132 |
tgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggtac |
231 |
Q |
| |
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||||||||| || ||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| ||| | |||| || | |
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|
| T |
19144520 |
tgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttggaat |
19144619 |
T |
|
| Q |
232 |
attagagcagcatatgatacactttgtccat |
262 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
19144620 |
tgaagagcagcatatgacacactttgtccat |
19144650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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