View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_10 (Length: 381)
Name: NF12787_low_10
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 49909959 - 49910314
Alignment:
| Q |
17 |
acataaaacatctatacgggaattgtgtaaacccgtttccgttagtcataaaagactaatatacgtttgagtagaagtggtatgtagctgccctacgtca |
116 |
Q |
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| T |
49909959 |
acataaaacatctatacgggaattgtgtaa-cccgtttccgttagtcataaaagactaatatacgtttgagtagaagtggtatgtagctgccctatgtca |
49910057 |
T |
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| Q |
117 |
aagtacctctagtaccaggaacacaaatcatgtgtgcatgagaatgctgcccaaaccatttgagttttgtggtttgttatttagacacgcttatgttctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910058 |
aagtacctctagtaccaggaacacaaatcatgtgtgcatgagaatgctgcccaaaccatttgagttttgtggtttgttatttagacacgcttatgttctc |
49910157 |
T |
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| Q |
217 |
aaaagtcaaaacacttggaggcaagggcccgtttggtggccaagattaggagattatcatatcctactcaagtctattgtttgatgcacctataggatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910158 |
aaaagtcaaaacacttggaggcaagggcccgtttggtggccaagattaggagattatcatatcctactcaagtctattgtttgatgcacctataggatat |
49910257 |
T |
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| Q |
317 |
gataaactaaccatatcactaattctatcttatttgtcttgcgttgctcttcatctc |
373 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
49910258 |
gataaactaaccatatcattaattctatcttatttgtcttgcgttgctcttcctctc |
49910314 |
T |
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