View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12787_low_11 (Length: 374)

Name: NF12787_low_11
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12787_low_11
NF12787_low_11
[»] chr3 (2 HSPs)
chr3 (1-360)||(27539724-27540083)
chr3 (3-242)||(20304672-20304910)
[»] chr4 (1 HSPs)
chr4 (43-360)||(16599578-16599894)
[»] chr6 (1 HSPs)
chr6 (1-153)||(7654158-7654309)
[»] scaffold0741 (1 HSPs)
scaffold0741 (1-243)||(5552-5793)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-242)||(41536-41776)
[»] chr7 (1 HSPs)
chr7 (1-242)||(26176694-26176933)
[»] chr5 (1 HSPs)
chr5 (4-236)||(37635405-37635636)
[»] chr1 (1 HSPs)
chr1 (1-111)||(15200395-15200502)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 27540083 - 27539724
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||| |||    
T  27540083 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatggattccaaggaccgacaacccttcagagaccggctcttcc 27539984  T
Q  101 ctagcttttggaacaacaaatgacactactttcagcaccggatttt-gtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttc 199  Q
    ||||||||||| ||||||||||||||||||  |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  27539983 ctagcttttggcacaacaaatgacactactc-cagcaccgaatttttgtggaagcagaaagggaaaccaatggtgaaattcaacaagatatacacgtttc 27539885  T
Q  200 tgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactact 299  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27539884 tgatcaagaaacataagcagcaacgattcctttgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactgct 27539785  T
Q  300 ttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattg 360  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  27539784 ttaccgactcctatggggatccataaagaaacagaaacaacaacggcttcattgcaaattg 27539724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 20304910 - 20304672
Alignment:
Q  3 ctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccct 102  Q
    ||||||| ||| |||||  || ||| || |||||||||||| ||| ||||||||| || |||||||||||| ||||||||||| ||| ||| || ||       
T  20304910 ctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactaacaacccttcagggatcggttcttcaag 20304811  T
Q  103 agcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctga 202  Q
    ||| |||||  ||||| |||||||||  ||||||||||  | || | |||  ||||||||||   ||||||||  |||| |||||||| |   || ||||    
T  20304810 agcatttggcgcaacacatgacacta-attcagcaccgattcttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgttttactga 20304712  T
Q  203 tcaagaaacagaagcagcaacgattcctctgcaaattgaa 242  Q
     ||||||||||||| |  | | ||||||||||||||||||    
T  20304711 gcaagaaacagaagtaatagcaattcctctgcaaattgaa 20304672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 43 - 360
Target Start/End: Complemental strand, 16599894 - 16599578
Alignment:
Q  43 gacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccgga 142  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| ||||||||||||||  |||||||||||||||||| ||||| ||||    
T  16599894 gacaaagaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactactt-cagcatcgga 16599796  T
Q  143 ttttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa 242  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  16599795 ttttgtggaagtggaaagggaaacaaatgatgacattcaacaagatatacacgtttctgaccaagaaacagaagcagcaacaattcctctgcaaattgaa 16599696  T
Q  243 ttacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaa 342  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16599695 ttacatgatgcgcacgaggagttagctcttatcagatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaacaacaa 16599596  T
Q  343 ctgtttcattgcaaattg 360  Q
    |   ||||||||||||||    
T  16599595 cgacttcattgcaaattg 16599578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 7654158 - 7654309
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| || ||| |||    
T  7654158 agctgccaaggaacaaatagcgcttggaaagaagcaagtttagacaaagaaagatacatggattccaaggactgacaacccttcagggatcgactcttcc 7654257  T
Q  101 ctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaag 153  Q
    || ||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  7654258 ctggcttttggcgcaacaaatgacactac-ttcagcaccggattttgtggaag 7654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5552 - 5793
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    ||||||||| ||| ||||||||| ||| || |||||||||||| ||| ||||||||| || |||| ||||||||||||||||||| ||| ||| || ||     
T  5552 agctgccaaagaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaagatacttggattcgaaggactgacaacccttcagggatcggttcttca 5651  T
Q  101 ctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttct 200  Q
      ||| |||||  ||||| |||||||||  ||||||||||  |||| | |||  ||||||||||   ||||||||  |||| |||||||| |  ||| ||    
T  5652 agagcatttggtgcaacacatgacacta-attcagcaccgatttttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgtgttact 5750  T
Q  201 gatcaagaaacagaagcagcaacgattcctctgcaaattgaat 243  Q
    || ||||||||||||| | || | |||||||||||||||||||    
T  5751 gagcaagaaacagaagtaacagcaattcctctgcaaattgaat 5793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41536 - 41776
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    ||||||||| ||| |||||| || ||| || |||||||||||| ||| ||||||||| || |||||||||| ||||||||||||| ||| ||| || ||     
T  41536 agctgccaaagaaaaaatagtgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggattgacaacccttcagggatcggttcttca 41635  T
Q  101 ctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttct 200  Q
      ||| |||||  ||||| || ||||||| |||| |||||| | || | |||  ||||||||||   |||||||| ||||| |||||| | |  ||| ||    
T  41636 agagcatttggcgcaacagatcacactac-ttcaacaccggttcttatagaaaaggaaagggaagtaaatgatgatattcagcaagatcttcgtgttact 41734  T
Q  201 gatcaagaaacagaagcagcaacgattcctctgcaaattgaa 242  Q
    || ||||||||||||||| || ||||||||||||||||||||    
T  41735 gagcaagaaacagaagcaacagcgattcctctgcaaattgaa 41776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 26176694 - 26176933
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    ||||||||| |||  |||||||| ||| || |||||||||||| |||  |||||||| || |||| ||||||||| ||||||||| ||| ||| || ||     
T  26176694 agctgccaaagaaataatagcgcatgggaaaaagcaagttcaggcaacaaaagatacttggattcgaaggactgaaaacccttcagggatcggttcttca 26176793  T
Q  101 ctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttct 200  Q
      ||| |||||  ||||| |||||||||| ||||||||||| | || | |||  ||||||||||   |||||| |  ||||||||||||| |  ||| ||    
T  26176794 agagcatttggcgcaacacatgacactac-ttcagcaccgggtcttatagaa-aggaaagggaagtaaatgataatcttcaacaagatattcgtgttact 26176891  T
Q  201 gatcaagaaacagaagcagcaacgattcctctgcaaattgaa 242  Q
    || ||||||||||||| | || | |||||||| |||||||||    
T  26176892 gagcaagaaacagaagtaacagcaattcctctacaaattgaa 26176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 37635636 - 37635405
Alignment:
Q  4 tgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcccta 103  Q
    |||||| ||| ||||| ||| ||| || |||||||||||| ||| ||||||||| || |||||||||||||||||||||||| ||| ||| || ||   |    
T  37635636 tgccaaagaaaaaataacgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactgacaacccttcagggatcggttcttcaaga 37635537  T
Q  104 gcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgat 203  Q
    || |||||  ||||| ||| |||||  |||| |||||  |||| | |||  ||||||||||   |||||||| ||||| |||||||| |  ||| ||||     
T  37635536 gcatttggcgcaacacatggcacta-attcaacaccgatttttatagaaaaggaaagggaagtaaatgatgatattcagcaagatattcgtgttactgag 37635438  T
Q  204 caagaaacagaagcagcaacgattcctctgcaa 236  Q
    ||  ||||||||| | |||| ||||||||||||    
T  37635437 cagcaaacagaagtaacaacaattcctctgcaa 37635405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15200502 - 15200395
Alignment:
Q  1 agctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtcc 100  Q
    ||||||||||||||||||||||||||| |||||| |  | || |||| ||||| ||||||  |||||   ||||||||||||||| | |  ||||| |||    
T  15200502 agctgccaaggaacaaatagcgcttgggaagaagtagatacaaacaacgaaagctacatgggttcca---actgacaacccttcaggtataggctcctcc 15200406  T
Q  101 ctagcttttgg 111  Q
    || ||||||||    
T  15200405 ctggcttttgg 15200395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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