View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12787_low_13 (Length: 356)
Name: NF12787_low_13
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 38736998 - 38736670
Alignment:
| Q |
19 |
tttagagccaccccatgcgcctcctttaaggatttcaaacacttcaaagcagcaattgagttgaacacacaacaaaatgtgtaaagatctggtttgacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38736998 |
tttagagccaccccatgcgcctcctttaaggatttcaaacacttcaaaccagcaattgagttgaacacacaacaaaatgtgtaaagatctggtttgacat |
38736899 |
T |
|
| Q |
119 |
cgttttggcacattcttgtgaacatttccaaagcttcaaggtgacaaccagcttgtgaataacccgtgatcattgcattccaaggcgcgttaaccagaca |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38736898 |
cattttggcacattcttgtgaacatttccaaagcttcaaggtgacaaccagcttgtgaataacccgtgatcattgcattccaaggtgcgttaaccagaca |
38736799 |
T |
|
| Q |
219 |
attcgcgaacttcgagtcaaaaagaactcgcgcatcacacagaaccccgcacttagagtacatattaataagagctgttccaactgaagtattgctatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38736798 |
attcgcgaacttcgagtcaaaaagaactcgcgcatcacacagaaccccgcacttagagtacatattaataagagctgttccaactgaagtattgctatcc |
38736699 |
T |
|
| Q |
319 |
aatccccattcataagcataccagtgaac |
347 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
38736698 |
aatccccattcataagcatacctgtgaac |
38736670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University