View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_22 (Length: 293)
Name: NF12787_low_22
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 3829505 - 3829247
Alignment:
| Q |
1 |
gcttaatgtaaatgtaaacgatgttttgttccttatgttaaannnnnnnnnnnnnnnnnnnnatttatatataaggattcttccacaaattgaactacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
3829505 |
gcttaatgtaaatgtaaacgatgttttgttccttatgttaaagtgtgtgagggtgtgtgtgtatttatatataaggattcttccacaaattgaactagag |
3829406 |
T |
|
| Q |
101 |
gaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctcctactcaaacgattaaatcaaagattcaattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829405 |
gaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctcctactcaaacgattaaatcaaagattcaattttat |
3829306 |
T |
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| Q |
201 |
ggagttggtggcccctttgttaattacaaacttggccagattccattttgttcatctca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829305 |
ggagttggtggcccctttgttaattacaaacttggccagattccattttgttcatctca |
3829247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3868601 - 3868340
Alignment:
| Q |
1 |
gcttaatgtaaatgtaaacgatgttttgttccttatgttaaannnnnnnnnnnnnnnnnnnnatttatatataaggattcttccacaaattgaactacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3868601 |
gcttaatgtaaatgtaaacgatgttttgttccttatgttaaagtgtgtgagggtgtgtgtgtatttatatataaggattcttccacaaattgaactacag |
3868502 |
T |
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| Q |
101 |
gaattaatcttcattaataattggcctgcattttaacttactcgatc----taactatttgcagctctcctactcaaacgattaaatcaaagattcaatt |
196 |
Q |
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| T |
3868501 |
gaattaatcttcattaataattggcctgcattttaacttactcgatctaattaactatctgaagctctcctacccaaacgattaaatcaaagattccatt |
3868402 |
T |
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| Q |
197 |
ttatggagttggtggcccctttgttaattacaaacttggccagattccattttgttcatctc |
258 |
Q |
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| T |
3868401 |
ttatggagttggtgtcccctttgttaattacaaacttggaaagattccattttgttcatctc |
3868340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 3864175 - 3863996
Alignment:
| Q |
68 |
tatataaggattcttccacaaattgaactacaggaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctcct |
167 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||| |
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| T |
3864175 |
tatataaggattcttccacaaattgaacagcaggaattaatcttcattaataattggcttgcattttaacttacacggtctaactatttgcag--ctcct |
3864078 |
T |
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| Q |
168 |
actcaaacgattaaatcaaagattcaattttatggagttggtggcccctttgtt-aattacaaacttggccagattccattt |
248 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||| |||| || |||| ||||| |||| ||||||||||| |
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| T |
3864077 |
cctcaaacgattaaatcaaagattccattttatggagttggcggccactttcttgaattgcaaacatggcaagattccattt |
3863996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 3826500 - 3826327
Alignment:
| Q |
68 |
tatataaggattcttccacaaattgaactacaggaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctcct |
167 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
3826500 |
tatataaagattcttccacaaattgaacagcaggaattaatcttcattaataattggcttgcattttaacttactcgatctaactatttgcag--ctcct |
3826403 |
T |
|
| Q |
168 |
actcaaacgattaaatcaaagattcaattttatggagttggtggcccctttgtt-aattacaaacttggccagatt |
242 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||| |||| ||| || |||| |||||||||| ||||| |
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| T |
3826402 |
cctcaaacgattaaatcaaagattccattttatggtgttggcggccaatttcttgaattgcaaacttggcaagatt |
3826327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 3822064 - 3821885
Alignment:
| Q |
68 |
tatataaggattcttccacaaattgaactacaggaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctcct |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| ||||| |||| || ||||| |||||||||||||||||||||||||||| ||||| |
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| T |
3822064 |
tatacaaggattcttccacaaattgaacagcaggaattaatctttattaaaaatttgcttgcatcttaacttactcgatctaactatttgcag--ctcct |
3821967 |
T |
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| Q |
168 |
actcaaacgattaaatcaaagattcaattttatggagttggtggcccctttgtt-aattacaaacttggccagattccattt |
248 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||| |||| || |||| |||||||||| ||||| ||||| |
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| T |
3821966 |
cctcaaacgattaaatcaaagattccattttatggagttggcggccactttcttgaattgcaaacttggcaagatttcattt |
3821885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 248
Target Start/End: Complemental strand, 3862437 - 3862259
Alignment:
| Q |
66 |
tatatataaggattcttccacaaattgaactacaggaattaatcttcattaataattggcctgcattttaacttactcgatctaactatttgcagctctc |
165 |
Q |
| |
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||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| || |
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| T |
3862437 |
tatatataaggattcttccacgaattgaacagaagggattaatcttcattaataattggcttgcattttaacttacttcgtctaactttttgcaggtc-- |
3862340 |
T |
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| Q |
166 |
ctactcaaacgattaaatcaaagattcaattttatggagttggtggcccctttgtt-aattacaaacttggccagattccattt |
248 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||| |||| || |||| || |||||| ||||||||||| |
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| T |
3862339 |
---ctcaaacgattaaatcaaagattccattttatggagttggcggccactttcttgaattgcagacttggaaagattccattt |
3862259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 3820683 - 3820638
Alignment:
| Q |
102 |
aattaatcttcattaataattggcctgcattttaacttactcgatct |
148 |
Q |
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|||||||||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
3820683 |
aattaatcttcattaacaattggcttgc-ttttaacttactcgatct |
3820638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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