View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_23 (Length: 268)
Name: NF12787_low_23
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 12306095 - 12306338
Alignment:
| Q |
15 |
attttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacaggtacattgttaattttatcgatgcatgaaatcttgctatat |
114 |
Q |
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| T |
12306095 |
attttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacaggtacattgttaatttcatcgatgcatggaatcttgttatat |
12306194 |
T |
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| Q |
115 |
aaaaagcgatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtctagatgggatactcactgctatacaaacattagcatctactg |
214 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12306195 |
aaaaagcaatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtctagatgggatactcactgctgtacaaacattagcatctactg |
12306294 |
T |
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| Q |
215 |
cactgtgtggaattatacactctattattggaggccagcctttg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12306295 |
cactgtgtggaattatacactctattattggaggccagcctttg |
12306338 |
T |
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