View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_24 (Length: 264)
Name: NF12787_low_24
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 2273882 - 2273658
Alignment:
| Q |
17 |
atggagaaacagaaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtgggattgtggaagtacacttt |
116 |
Q |
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| T |
2273882 |
atggagaaacagaaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtgggattgtggaagtacacttt |
2273783 |
T |
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| Q |
117 |
atgattcctttgaactcaactccttcaaaaaccaacttgactcagccatagctagttcaaacattttaaatagaacactttccatgtctcatttaccgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273782 |
atgattcctttgaactcaactccttcaaaaaccaacttgactcagccatagctagttcaaacattttaaatagaacactttccatgtctcatttaccgga |
2273683 |
T |
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| Q |
217 |
gcgtcgagtcacagtacttcagaaa |
241 |
Q |
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||||| ||||||||||||||||||| |
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| T |
2273682 |
gcgtcaagtcacagtacttcagaaa |
2273658 |
T |
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