View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_34 (Length: 226)
Name: NF12787_low_34
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 25290652 - 25290871
Alignment:
| Q |
1 |
ctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttcc |
100 |
Q |
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| T |
25290652 |
ctagcttggtattggagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttcc |
25290751 |
T |
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| Q |
101 |
ggtgtttt-tacctttggagctgttattataagactgctgtgttgtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttt |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25290752 |
ggtgttttttacctttggagctgttattataagactgttgtgttgtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttt |
25290851 |
T |
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| Q |
200 |
tgctagtggtgcggtctgtg |
219 |
Q |
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|||||||||||||||||||| |
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| T |
25290852 |
tgctagtggtgcggtctgtg |
25290871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 19251089 - 19251002
Alignment:
| Q |
5 |
cttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
93 |
Q |
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| T |
19251089 |
cttggttttggagtatgagtaagttgaaaa-catcatgtgtttgtattataagtggtgttagaaccctcggtaatgcttacttagatag |
19251002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9443626 - 9443534
Alignment:
| Q |
1 |
ctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
93 |
Q |
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| T |
9443626 |
ctagcttggtattggagtatgagtaagctaaaaatagcgacgtgcttgtcttatgagtggtgttggaaccctcgggagtgcttacttcgatag |
9443534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 744492 - 744434
Alignment:
| Q |
40 |
tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt |
98 |
Q |
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|||||||||||||| |||||| ||||||||||||| || | |||| |||||||| |||| |
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| T |
744492 |
tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagatagctttt |
744434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 748422 - 748364
Alignment:
| Q |
40 |
tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt |
98 |
Q |
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|||||||||||||| |||||| ||||||||||||| || | |||| |||||||| |||| |
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| T |
748422 |
tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagataggtttt |
748364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4282279 - 4282372
Alignment:
| Q |
1 |
ctagcttggtattagagtatgagtaagtt-aaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
93 |
Q |
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||||||||||||| ||||||||||||| | |||||| | | |||||||||||||||||| |||||||||||||||| || ||||| |||||| |
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| T |
4282279 |
ctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgtttactaagatag |
4282372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 25187945 - 25187880
Alignment:
| Q |
2 |
tagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttgga |
67 |
Q |
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|||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||| |||||| |
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| T |
25187945 |
tagcttggtattggagtatgagtaagttaaaaatagcattgtgcttgtattatgagtggtgttgga |
25187880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 19724305 - 19724198
Alignment:
| Q |
2 |
tagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccg |
101 |
Q |
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|||||||||||| ||||||||||| |||||| | || ||||||||||| |||| | |||||||||||| |||||| |||||||||||||| || | |
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| T |
19724305 |
tagcttggtattggagtatgagtagacaaaaaatggtatcatgtttgtattaagagttgtgttggaaccctcaggagtgtttacttagatagttgttatg |
19724206 |
T |
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| Q |
102 |
gtgttttt |
109 |
Q |
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|||||||| |
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| T |
19724205 |
gtgttttt |
19724198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 15063091 - 15063000
Alignment:
| Q |
2 |
tagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
93 |
Q |
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|||||||||||| ||||||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| | ||||||||||| |
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| T |
15063091 |
tagcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattacgagtggcgttggaaccctcgggagcgtctacttagatag |
15063000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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