View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_4 (Length: 452)
Name: NF12787_low_4
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 22488055 - 22488484
Alignment:
| Q |
1 |
gacataaacaacacattgtcattaggcaaggatgatatattttgttatcaacaaatgtcccttaatctgcactattgctggatctactccgtttaacagg |
100 |
Q |
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| T |
22488055 |
gacataaacaacacattgtcattagtcaaggatgaaatattttgttatcaacaaatgtcccttaatctacactattgttggatctactccgtttaacagg |
22488154 |
T |
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| Q |
101 |
tccaatctgatggaaacctattaaaacaatgtttaaacataatcactcccataataaaaccatgtcatcaaatcatgaccaaaactaaacagtcattgca |
200 |
Q |
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| T |
22488155 |
tccaatctgatggaaacctattaaaacaatgtctaaacataatcactcccataataaaaccatgtcatcaaatcatgaccaaaactaaacagtcattgca |
22488254 |
T |
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| Q |
201 |
gaagaattatgatatgctttcaaatcttgtataaaccataaacgaagacttcaatatcccaggattcctccgcgtgagtagttgaagcagcaaagtgttt |
300 |
Q |
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| T |
22488255 |
gaagaattatgatatgctttcaaatcttgtataaaccataaacgaagacttcaatatcccaggattcctccgcgtgagtagttgcagcagcaaagtgttt |
22488354 |
T |
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| Q |
301 |
cagaaagaggaagacaataataaatcgaagacaacattcgactaaaggaaaaacgtatgcgcacttactttcaattgaaggaaaatgaatgcagaaaaat |
400 |
Q |
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| T |
22488355 |
cagaaagaggaagacaataataaatcgaagacaacattcgactaaaggaaaaacgtatgcgcacttactttcaatagaaggaaaatgaatgcagaaaaat |
22488454 |
T |
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| Q |
401 |
atcatgtcaaatacattcttattcccacgt |
430 |
Q |
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| T |
22488455 |
atcatgtcaaatacattcttattcccacgt |
22488484 |
T |
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