View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12787_low_5 (Length: 446)
Name: NF12787_low_5
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 48866562 - 48866992
Alignment:
| Q |
1 |
ccaattgaattaattagggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgctta---gttttgtcagaccgtag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48866562 |
ccaattgaattaattagggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgcttataagttttgtcagaccgtag |
48866661 |
T |
|
| Q |
98 |
ttcaggttgagcagctttgtgaagtggcaaagtttcacctttgagtctaggtataacactgcttacacaccgtgatatttggaggtattacgtgtccttt |
197 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
48866662 |
ttcaggttgagcggctttgtgaagtggcaaagtttcacctttgagtctaggtataacactgcttacacatcgtgatatttggaggtattatgtgtctttt |
48866761 |
T |
|
| Q |
198 |
tctatttattcggctttacatttttcttcgaatcttcatacttttccactcttagcaggtcgtgggcacattaattgttctcgacctctatgtgctgtct |
297 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48866762 |
tctatttattgggctttacatttttcttcgaatcttcatacttttccactcttagcaggtcgtgggcacattaattgttctcgacctctatgtgctgtct |
48866861 |
T |
|
| Q |
298 |
tgctatatagttggtttagctctgtgtctttgaacctttgcgaccttttcaaaaccagtttaagtcacaaaagggtagaattttgatagaactgtgatag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48866862 |
tgctatatagttggtttagctctgtgtctttgaacctttgcgaccttttcaaaaccagtttaagtcacaaaagggtagaattttgatagaactgtgatag |
48866961 |
T |
|
| Q |
398 |
aatctggtatatacagttatagggggactgc |
428 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |
|
|
| T |
48866962 |
aatctggtacatacagttatacggggactgc |
48866992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 48873538 - 48873708
Alignment:
| Q |
1 |
ccaattgaattaattagggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgcttagttttgtcagaccgtagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||| |
|
|
| T |
48873538 |
ccaattgaattaattagggccttactctggtgtttgcctatttcaggcttacaagcctagctgaatggttctcatgcttggttttttcagaccgtcgttc |
48873637 |
T |
|
| Q |
101 |
aggttgagcagctttgtgaagtggcaaagtttcacctttgagtctaggtataacactgcttacacaccgtg |
171 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
48873638 |
aggttgagcggctctgtgaagtggcaaaatttcacctttgagtctcggtataacacagcttatataccgtg |
48873708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 48878842 - 48879012
Alignment:
| Q |
1 |
ccaattgaattaattagggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgcttagttttgtcagaccgtagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||| |
|
|
| T |
48878842 |
ccaattgaattaattagggccttactctggtgtttgcctatttcaggcttacaagcctagctgaatggttctcatgcttggttttttcagaccgtcgttc |
48878941 |
T |
|
| Q |
101 |
aggttgagcagctttgtgaagtggcaaagtttcacctttgagtctaggtataacactgcttacacaccgtg |
171 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
48878942 |
aggttgagcggctctgtgaagtggcaaaatttcacctttgagtctcggtataacacagcttatataccgtg |
48879012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 48857110 - 48857220
Alignment:
| Q |
240 |
tttccactcttagcaggtcgtgggcacattaattgttctcgacctctatgtgctgtcttgctatatagttggtttagctctgtgtctttgaacctttgcg |
339 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||| | |||||||||||| |||||||| |||||||||||| | ||| |||||||||||||| | || |
|
|
| T |
48857110 |
tttccgctcttagcaggtcacggggacattaattgtctttgacctctatgtgatgtcttgcaatatagttggttcatctcagtgtctttgaacctctccg |
48857209 |
T |
|
| Q |
340 |
accttttcaaa |
350 |
Q |
| |
|
||||||||||| |
|
|
| T |
48857210 |
accttttcaaa |
48857220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48841884 - 48841757
Alignment:
| Q |
1 |
ccaattgaattaattagggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgcttagttttgtcagaccgtagttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||| | ||| | | |||||| |||| |||| |
|
|
| T |
48841884 |
ccaattgaattatagagggccttatttttgtgtttgcctatttcaggctaacaagcctagctgagtggttcttatgctgggctctgtcaggccgtggttc |
48841785 |
T |
|
| Q |
101 |
aggttgagcagctttgtgaagtggcaaa |
128 |
Q |
| |
|
| ||||| | |||||||||||||||||| |
|
|
| T |
48841784 |
atgttgaacggctttgtgaagtggcaaa |
48841757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 48857023 - 48857069
Alignment:
| Q |
170 |
tgatatttggaggtattacgtgtccttttctatttattcggctttac |
216 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
48857023 |
tgatacttggaggtattacatgtctttttctatttatttggctttac |
48857069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 48879406 - 48879438
Alignment:
| Q |
132 |
tcacctttgagtctaggtataacactgcttaca |
164 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
48879406 |
tcacctttgagtctcggtataacactgcttaca |
48879438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 35647292 - 35647178
Alignment:
| Q |
16 |
agggccttattctgatgtttgcctatttcaggcttacaagcctagctgaatggttctcacgcttagttttgt-cagaccgtagttcaggttgagc-agct |
113 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||||||||||||| ||||||||| |||| | ||||| ||| | || ||||||||||| | ||| |
|
|
| T |
35647292 |
agggccttactttggtgtttgcctatttcaggctaacaagcctagctgagtggttctcatgcttggctttgtccaggctgtggttcaggttgaacgggct |
35647193 |
T |
|
| Q |
114 |
ttgtgaagtggcaaa |
128 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
35647192 |
tcgtgaagtggcaaa |
35647178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 35646837 - 35646750
Alignment:
| Q |
265 |
acattaattgttctcgacctctatgtgctgtcttgctatatagttggtttagctctgtgtctttgaacctttgcgaccttttcaaaaccagt |
356 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||| |||||||||||||||| || |||||| |||||| || |||||||||||| ||||| |
|
|
| T |
35646837 |
acatcaattgtcctcgacctctatg--ctgtcttggtatatagttggtttagttcagtgtctctgaaccctt--gaccttttcaaatccagt |
35646750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University