View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12787_low_9 (Length: 385)
Name: NF12787_low_9
Description: NF12787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12787_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34473638 - 34473877
Alignment:
| Q |
1 |
gagtgtatcagcattactaaatgtgtattattcatgtaaacataagctgtaataattgattatttgaattgcaactatataccagaatattaaatatatt |
100 |
Q |
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| T |
34473638 |
gagtgtatcagcattactaaatgtgcattattcatgtaaacataagctgtaataattgattaattgaattgcaactatataccataatattaaatatatt |
34473737 |
T |
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| Q |
101 |
gcagattgagactcaaattaatacaccaaatcacttcctcccaatttctgttgtaatcaaaatggattaatcatccaacaaaaccatctttccaaaaaca |
200 |
Q |
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| T |
34473738 |
gcagattgcaact-------atacaccaaatcacttcctcccaatttctgctgtaatcaaaatggattaatcatccaacaaaaccatctttccaaaaaca |
34473830 |
T |
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| Q |
201 |
ttaatggaattgaaaaccattcataggaaaggcaaggatatcccaaa |
247 |
Q |
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| T |
34473831 |
ttaatggaattgaaaaccattcatagaaaaggcaaggatatcccaaa |
34473877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 34474363 - 34474456
Alignment:
| Q |
273 |
atactttcaatttcacaactccaagcatctttgtttccataattttttcctggatttcttcctccaatacaaagagtggcctcctccaagaaatc |
367 |
Q |
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| T |
34474363 |
atactatcaatttcacaactccaagcatctttgtttccataattttttcc-cgatttcttcctccaatacaaagagtggcctcctccaagaaatc |
34474456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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